View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_high_9 (Length: 557)
Name: NF19193_high_9
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 11 - 542
Target Start/End: Complemental strand, 11667748 - 11667217
Alignment:
| Q |
11 |
cacagatgaaagacaaactctagttacagaaacccaaacagcacaaccagatttgacacacttttagccgcccaaatactgattaataacaataataaaa |
110 |
Q |
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| T |
11667748 |
cacagatgaaagacaaactctagttacagaaacccaaacagcacaaccagatttgacacacttttagccgcccaaatactgattaataacaataataaaa |
11667649 |
T |
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| Q |
111 |
tcagtctgtttgagctgcttaaacttataccagttctaaattcaaacgaacaattttgtcatatagtagcataaaagaaaaccagatattcatcttacat |
210 |
Q |
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| T |
11667648 |
ttagtctgtttgagctgcttaaacttataccagttctaaattcaaacgaacaattttgtcatatcgtagcataaaagaaaaccagatattcatcttacat |
11667549 |
T |
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| Q |
211 |
tgagaatagatggttctggtaatgggcactgaataggtcgatcattatcaaggggttcaactggatgttcaactggcttaaactcaacagccacttcaat |
310 |
Q |
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| T |
11667548 |
tgagaatagatggttctggtaatgggcactgaataggtcgatcattatcaaggggttcaactggatgttcaactggcttaaactcaacagccacttcaat |
11667449 |
T |
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| Q |
311 |
tccatgagaagttgcagtggtagcacttgcagctacagcagccgccacctctgagtttgcaggcgtcacttccctttcatcctgcacaatatgaagtcga |
410 |
Q |
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| T |
11667448 |
tccatgagaagttgcagtggtagcacttgcagctacagcagccgccacctctgagtttgcaggcgtcacttccctctcatcctgcacaatatgaagtcga |
11667349 |
T |
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| Q |
411 |
cacacaatgtcaccaattaaaactcgtccacataacttaccgaacagacaaataaacacaggacatgtttggatttgagtttatctactagcagaagcac |
510 |
Q |
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| T |
11667348 |
cacacaatgtcaccaattaaaactcgtccacataacttaccaaacagacaaataaacacaggacatgtttggatttgagtttatctactagcagaagcac |
11667249 |
T |
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| Q |
511 |
cggtaagcctatctgggagagcttgtagaaac |
542 |
Q |
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| T |
11667248 |
tggtaagcctatctgggagagcttgtagaaac |
11667217 |
T |
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