View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_high_99 (Length: 208)
Name: NF19193_high_99
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_high_99 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 41589566 - 41589384
Alignment:
| Q |
12 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41589566 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
41589467 |
T |
|
| Q |
112 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaagt |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41589466 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaagt |
41589384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 41583037 - 41582857
Alignment:
| Q |
12 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41583037 |
gataattcttcattctgctgaaagcttgtgtttcgaagtagcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
41582938 |
T |
|
| Q |
112 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtctgaa |
192 |
Q |
| |
|
| ||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41582937 |
tggtatcacctacatgcaattgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttctctgtctgaa |
41582857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 41570618 - 41570441
Alignment:
| Q |
12 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
111 |
Q |
| |
|
|||||||| | ||||||||| ||||||||||||||||||||||||||| | | |||||||||||| ||||||| ||||||||||||||||| |||||| | |
|
|
| T |
41570618 |
gataattcataattctgctgaaagcttgtgttttgaagtggccctttttttactttagtaccaaggactagtaatttatcaaataattctggtaactcgc |
41570519 |
T |
|
| Q |
112 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtct |
189 |
Q |
| |
|
| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41570518 |
tgttatcatctacatatacttgttctgactcattttgtgacacattgagaaaatgctcttcttcaaagttttctgtct |
41570441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 189
Target Start/End: Complemental strand, 41556906 - 41556744
Alignment:
| Q |
12 |
gataattcttcattctgctggaagcttgtgttttgaagtggcccttttgtgaatttagtaccaagaactagtactttatcaaataattctgataactcac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||| | |
|
|
| T |
41556906 |
gataattcttcattctgctggaagcttgtgttttgatgcggcccttttgtgactttagtaccaaga---agtaatttatcaaataattctgataactcgc |
41556810 |
T |
|
| Q |
112 |
cgctatcatctacatacacttgttctgatccattttgtgacacattgagaaaatgctcttcttcaaagttttctgtct |
189 |
Q |
| |
|
| |||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41556809 |
tgttatcatctactttcacttgttc------------tgacacattaagaaaatgctcttcttcaaagttttctgtct |
41556744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University