View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_low_11 (Length: 522)
Name: NF19193_low_11
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_11 |
 | |
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| [»] scaffold1463 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 15 - 510
Target Start/End: Complemental strand, 48067082 - 48066587
Alignment:
| Q |
15 |
aagagcaaggtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttcccattcggat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48067082 |
aagagcaaggtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttcccattcggat |
48066983 |
T |
|
| Q |
115 |
gtgggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtatag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48066982 |
gtgggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtatag |
48066883 |
T |
|
| Q |
215 |
tacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48066882 |
tacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttg |
48066783 |
T |
|
| Q |
315 |
tggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagat |
414 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48066782 |
tgggacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagat |
48066683 |
T |
|
| Q |
415 |
atagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
510 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48066682 |
atagtggacaattaattgcatgggacgttgtgaacgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
48066587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 14 - 499
Target Start/End: Complemental strand, 48100028 - 48099543
Alignment:
| Q |
14 |
caagagcaaggtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttcccattcgga |
113 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||||| ||||| | ||||||||||| | ||||||||||||||||||||||| |||||||| | ||| |
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|
| T |
48100028 |
caagagcaaggtgagattccatgtaactcatctaaacaaaacagaaatggaaggagcatcaattgtcatcaaacaaacaaaggcaaatttcccacttgga |
48099929 |
T |
|
| Q |
114 |
tgtgggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtata |
213 |
Q |
| |
|
|||||||||||| || ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
48099928 |
tgtgggatgaaccattacatccttacaaactttgagtaccagagatggtttgtgtcaagattcaagtacacagcttttactaatgagatgaagtggtata |
48099829 |
T |
|
| Q |
214 |
gtacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccatttt |
313 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
48099828 |
gtacagagagatttcaaggccaggaaaactatactatcccagatgccatgatgaaattcgccaaagaaaatggcatttctgtcagaggtcataccgtttt |
48099729 |
T |
|
| Q |
314 |
gtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaaga |
413 |
Q |
| |
|
||| ||||||||| |||||||| ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| | |||||| |||||||| |
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| T |
48099728 |
ctgggacgatgaaacttttcagcctaaatgggttaagttcctatctcctgaagaattacgaaaagcggctgcaaaaagaataagatctgtggtttcaagg |
48099629 |
T |
|
| Q |
414 |
tatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctc |
499 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||| |
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|
| T |
48099628 |
tatagaggacaactgattgcatgggacgttgtgaatgagaatgtccactaccacttttttgagaacaaactcggcgaaaatgcctc |
48099543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 48062993 - 48062500
Alignment:
| Q |
15 |
aagagcaaggtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttcccattcggat |
114 |
Q |
| |
|
||||||| ||||| |||||| |||| ||||| ||| |||||| |||||||||||||| ||||| || |||||||||| |||| |||| |||| |||| |
|
|
| T |
48062993 |
aagagcagggtgagattccaggtaactcatccaaatgaaacagtgttggaaggagcaacagttgttattaaacaaacaagggcaaattttccatatggat |
48062894 |
T |
|
| Q |
115 |
gtgggatgaactatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtatag |
214 |
Q |
| |
|
||| ||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
48062893 |
gtgcgatgaaccgtcatatcctcacaaacagtgactaccagaaatggtttgtgtcaagattcaaatacacaactttcactaacgagatgaagtggtatag |
48062794 |
T |
|
| Q |
215 |
tacagagaaaattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttg |
314 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| || |||||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||| |
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|
| T |
48062793 |
tacagagaaaatccaaggccatgaaaactatactatcccagatgccatgctgaaatttgctaaggaaaatggcatatctgtcagaggtcataacattttg |
48062694 |
T |
|
| Q |
315 |
tggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagat |
414 |
Q |
| |
|
||| || ||||||| ||| || |||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| | |
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|
| T |
48062693 |
tgggacagtgaaagacgtcaacctgaatgggatttgtccctgtctcctgatgaattacgagaagcagctgcaaaaagaatgaaatccgtggtctcaaggt |
48062594 |
T |
|
| Q |
415 |
atagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtata |
508 |
Q |
| |
|
||| ||||||||||||||||||||||| || || ||||||||||| || ||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48062593 |
ataaaggacaattgattgcatgggacgtggtaaatgagaatgtccacttccacttttttgaggacaacctcggcaaaaatgcctctgcagtata |
48062500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 24 - 501
Target Start/End: Complemental strand, 48106619 - 48106142
Alignment:
| Q |
24 |
gtgacattccaagtaaatcatctaaacgaaacatcattggaaggagcaacggttgtcatcaaacaaacaaaggcagatttcccattcggatgtgggatga |
123 |
Q |
| |
|
|||| |||||| |||| | || |||| |||||| |||||||||||||||| ||||| || | |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48106619 |
gtgagattccatgtaagtaatgtaaatgaaacagcattggaaggagcaacagttgtgataacacaaacaaaggcagatttcccatttggatgtgggatga |
48106520 |
T |
|
| Q |
124 |
actatcacatcctcacaaacattgagtaccagaaatggtttgtgtcaagattcaagtacacaactttcactaatgagatgaagtggtatagtacagagaa |
223 |
Q |
| |
|
|| |||| || |||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||| | |
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|
| T |
48106519 |
accatcatatactcacaaacattgactaccaggaatggtttgtgtcaagattcaaatacacaactttcaccaatgaaatgaaatggtatagtacagaaat |
48106420 |
T |
|
| Q |
224 |
aattcaaggccaggaaaactatactattcctgatgccatgctgaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgat |
323 |
Q |
| |
|
||||| |||||| |||||||| ||||| | ||||| ||| | ||||||| ||||| ||||| |||||||||||||||||| |||||| ||| ||||| |
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|
| T |
48106419 |
aattccaggccaagaaaactacactatctcagatgcaatgttagaatttgctaaagataatggaatttctgtcagaggtcataacattttctgggacgat |
48106320 |
T |
|
| Q |
324 |
gaaagatttcagccccaatgggtgaagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggac |
423 |
Q |
| |
|
|||| || ||| || ||||||| |||| |||| || || ||||| || |||| || ||||||||| ||||||||||| ||| |||| ||| |
|
|
| T |
48106319 |
gaaaaatatcaacctgaatgggttaagtatttatcgcccgatgaattgcgcaaagccgcgaaaaaaagaatcgaatctgttgttaaaaggtataaaggag |
48106220 |
T |
|
| Q |
424 |
aattgattgcatgggacgttgtgaacgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctg |
501 |
Q |
| |
|
|||||||||||||||| || ||||| || ||||||||| | ||||| |||||||||||| || |||||||| |||| |
|
|
| T |
48106219 |
aattgattgcatgggatgtggtgaatgaaaatgtccattttcacttttatgaggacaaactaggtgaaaatgcatctg |
48106142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 510
Target Start/End: Original strand, 849 - 1005
Alignment:
| Q |
354 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
849 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
948 |
T |
|
| Q |
454 |
atgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
510 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
949 |
atgtccacaaccgatttttttaggacaaactcggagaaaatgcctctgcagtatatt |
1005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 348 - 510
Target Start/End: Complemental strand, 50231389 - 50231227
Alignment:
| Q |
348 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtga |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50231389 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatttttggtttcaagatatagtggacaattgattgcatgggacgttgtaa |
50231290 |
T |
|
| Q |
448 |
acgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
510 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50231289 |
acgagaatgtccacaaccggttttttgaggacaaactcggcaaaaatgcctctgcagtatatt |
50231227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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