View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_12 (Length: 517)
Name: NF19193_low_12
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 22278136 - 22278638
Alignment:
| Q |
1 |
ctcacgatatctttccaccaactcgaccctcccagactcccctccttcacccacccactttatacttcgtacctcgccacagacgtacaatacaacaatc |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278136 |
ctcacgatatccttccaccaactcgaccctcccagacccccctccttcacccacccactttatacttcgtacctcgccacagacgtacaatacaacaatc |
22278235 |
T |
|
| Q |
101 |
accctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctccttactcaaacaaacataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22278236 |
cccctgatccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctccttactcaaacaaacataat |
22278335 |
T |
|
| Q |
201 |
ctgaataaacccagaaagtttacctatattcctcacccccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggcttt |
300 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
22278336 |
ctgaataaacctagaaaatttacctatattcctcacccccaccccaaaaaagacaacataaaatagaatcgatagaggaaatgatacctgaagaggcttt |
22278435 |
T |
|
| Q |
301 |
gaagaagtaaatagcataaacatgaagagatgatggtacatacttcaacgcacaatttcatctttaatttctagccaaaagtctttgaaaaaactaaaat |
400 |
Q |
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||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22278436 |
gaagaagtagatagcataaacatgaaaagatgatggtacatacttcaacgcacaatttcatcttttatttctagccaaaagtctttgaaaaaactaaaat |
22278535 |
T |
|
| Q |
401 |
ttataccatccagaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacacgagacaaactacgaaa |
500 |
Q |
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| T |
22278536 |
ttataccatccggaccagaactcttaaaacagtcccagatctccactttaacttcctcgaaattgaatagtttaatcaagacatgagacaaactacgaaa |
22278635 |
T |
|
| Q |
501 |
atg |
503 |
Q |
| |
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||| |
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| T |
22278636 |
atg |
22278638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 7287299 - 7287375
Alignment:
| Q |
107 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
183 |
Q |
| |
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|||| |||||| |||||||| || | || || |||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
7287299 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7287375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 7287967 - 7288043
Alignment:
| Q |
107 |
atccaccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcctcctt |
183 |
Q |
| |
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|||| |||||| |||||||| || | || || |||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
7287967 |
atccgccaacaccattttcctaataatgaaatattaaattcacataaccgccgcacccccaaacctccttcctcctt |
7288043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 21089945 - 21089887
Alignment:
| Q |
272 |
atagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
330 |
Q |
| |
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|||| ||||||||||||||||| | |||||||||| |||||||||||| | ||||||| |
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| T |
21089945 |
atagaggaaatgatacctgaagggaatttgaagaaggaaatagcataaataggaagaga |
21089887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 324
Target Start/End: Original strand, 17829460 - 17829525
Alignment:
| Q |
259 |
taaaatagaattgatagcggaaatgatacctgaagaggctttgaagaagtaaatagcataaacatg |
324 |
Q |
| |
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||||| ||||| ||||| ||| ||||||||||| | |||||||||||| ||||||||||| |||| |
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| T |
17829460 |
taaaaaagaatcgatagaggagatgatacctgagggagctttgaagaagaaaatagcataatcatg |
17829525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 380706 - 380758
Alignment:
| Q |
278 |
gaaatgatacctgaagaggctttgaagaagtaaatagcataaacatgaagaga |
330 |
Q |
| |
|
|||||||||||||| || |||||||||||| ||| |||||| ||||| ||||| |
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|
| T |
380706 |
gaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagaga |
380758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 41352634 - 41352565
Alignment:
| Q |
238 |
cccaccccaaaaaagacaacataaaatagaattgatagcggaaatgatacctgaagaggctttgaagaag |
307 |
Q |
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| T |
41352634 |
cccaccctaaaagaaacgacataaaatagaatcaatagaggaaatgatatctgacggggctttgaagaag |
41352565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 51072196 - 51072127
Alignment:
| Q |
110 |
caccaacatcattttcccaacagtgcaacattaaactcacttaaccacctcacccccatacctccttcct |
179 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||| || | || ||| ||||||| ||||||||||| |
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| T |
51072196 |
caccaacaccatttccctaacagagcaacattaaactccctcatcctcctgacccccaaacctccttcct |
51072127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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