View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_16 (Length: 464)
Name: NF19193_low_16
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 109 - 447
Target Start/End: Original strand, 2991053 - 2991389
Alignment:
| Q |
109 |
tgattgtcaattcaagttcatgtggcacaaaagagtgctctgattcattggtttgaannnnnnnnnnnnnnn--aatattttacaagatttaaatggtga |
206 |
Q |
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| T |
2991053 |
tgattgtcaattcaagttcatgtggcacaaaagagtgctctgattcattagtttgaattttttatttattttttaatattttacaagatttaaatggtga |
2991152 |
T |
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| Q |
207 |
acaaattcattctttctagatttttgtactaatttttatattgtaaactaattaagagaagttaatgaggataagatttgaggctatacaaggattttgn |
306 |
Q |
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| T |
2991153 |
acaaattcattctttctagatttttgtactaatttttatattgtaaactaattaagagaagttaatgaggataagatttgaggctatacaaggatttt-- |
2991250 |
T |
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| Q |
307 |
nnnnnnnngtcaactttaaagattttactagcatgtatgtatgcttgagagaagactgaggattaatcagcttcagagattggaacacacaattatatga |
406 |
Q |
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| T |
2991251 |
--ttttttgtcaactttaaagattttactagcatgcatgtatgcttgagagaagactgaggattaatcagcttcagagattggaacacacaattatatga |
2991348 |
T |
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| Q |
407 |
ccatattaaatctttgcaatcaacaccatgtattctttttt |
447 |
Q |
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| T |
2991349 |
ccatattaaatctttgcaatcaacaccatgtattctttttt |
2991389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 2990965 - 2991024
Alignment:
| Q |
21 |
cgtacaaattgggaaaatcaagcagaaagagctaaggagttaacatcatcagattcaagt |
80 |
Q |
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| T |
2990965 |
cgtacaaattgggaaaatcaagcagaaagagctaaggagttaacatcatcagattcaagt |
2991024 |
T |
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