View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_18 (Length: 456)
Name: NF19193_low_18
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 40760430 - 40759999
Alignment:
| Q |
19 |
cactgggtgaagagaagaaagtgaaagaaaagaaacatgaaggaaattgctctttaggcaccaacttcaaacatatgaggtatttcaaaatacctctcnn |
118 |
Q |
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| T |
40760430 |
cactgggtgaagagaagaaagtgaaagaaaagaaacatgaaggaaattgctctttaggcaccaacttcaaacatatgaggtatttcaaaatacctctctt |
40760331 |
T |
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| Q |
119 |
nnnnn-actctctaaagtttggttcttgttctgttaccagtttgaaattggttatgaagatggaagtgtggatattctagctttgaacttgaagtgcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40760330 |
ttttttactctctaaagtttggttcttgttctgttaccagtttgaaattggttatgaagatggaagtgtggatattctagctttgaacttgaagtgcatt |
40760231 |
T |
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| Q |
218 |
tgagtatagaggatctggtgtgtgtgtcaatttgttgctggtatagttggcacgttnnnnnnnntataaagtcatcattatgtctatannnnnnnnnnnn |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40760230 |
tgagtatagaggatctggtgtgtgtgtcaatttgttgctggtatagttggcacgttaaaaaaaatataaagtcatcattatgtctatatttttttgcttt |
40760131 |
T |
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| Q |
318 |
nncagtttcagattctccactattaccagtattgttcacatacaaatgaagttcaacagctgattgacgaaaaagatgtagcaggtttgtagttgtttta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40760130 |
ttcagtttcagattctccactattaccagtattgttcacatacaaatgaagttcaacagctgattgacgaaaaagatgtagcaggtttgtagttgtttta |
40760031 |
T |
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| Q |
418 |
gttccttggatgttatttattttacatctgtg |
449 |
Q |
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| T |
40760030 |
gttccttgtatgttatttattttacatctgtg |
40759999 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 397
Target Start/End: Original strand, 38634334 - 38634408
Alignment:
| Q |
323 |
tttcagattctccactattaccagtattgttcacatacaaatgaagttcaacagctgattgacgaaaaagatgta |
397 |
Q |
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| T |
38634334 |
tttcagattctccactattaccagcattgttcacttataaataaagtccatcagctggcagaagaaaaagatgta |
38634408 |
T |
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