View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_20 (Length: 450)
Name: NF19193_low_20
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 431
Target Start/End: Original strand, 8071021 - 8071438
Alignment:
| Q |
14 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgtgagcctatagacc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8071021 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgtgagcctatagacc |
8071120 |
T |
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| Q |
114 |
ttatcctaattctgcttgttgtgtttggaaaattgtgtcattgaaacttatattaatttatatatgatcaggttcttggcaacaagtatgatagtaagtt |
213 |
Q |
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| T |
8071121 |
ttatcctaattctgcttgttgtgtttggaaaattgtgtcattgaaacttatattaatttatatatgatcaggttcttggcaacaagtatgatagtaagtt |
8071220 |
T |
|
| Q |
214 |
gcttgaaataattgacgaaaggtgagttcataaatgcattgaatatctcagtatctggtttcttcatttgacaaataatctgaaattgattctttatttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8071221 |
gcttgaaataattgacgaaaggtgagttcataaatgcattgaatatctcagtatctggtttcttcatttgacaaataatctgaaattgattctttatttt |
8071320 |
T |
|
| Q |
314 |
tacgctcctcgtatttctttgtccatctttaagacttaatttccattgtgttttctttgtcagtgaattgcctgagtttttaggaggtaaatgtaaatgc |
413 |
Q |
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| T |
8071321 |
tacgctcctcgtatttctttgtccatctttaagacttaatttccattgtgttttctttgtcagtgaattgcctgagtttttaggaggtaaatgtaaatgc |
8071420 |
T |
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| Q |
414 |
gctgatgaaggaggatgt |
431 |
Q |
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| T |
8071421 |
gctgatgaaggaggatgt |
8071438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 32616469 - 32616380
Alignment:
| Q |
14 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgtgag |
103 |
Q |
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| T |
32616469 |
catcatcaatgcaggttctggattcagaatgttgtggaacactgttaaatctttccttgacccaaagaccaccgcaaaaatccatgtgag |
32616380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 32616297 - 32616239
Alignment:
| Q |
180 |
atcaggttcttggcaacaagtatgatagtaagttgcttgaaataattgacgaaaggtga |
238 |
Q |
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| T |
32616297 |
atcaggttcttggcaacaagtaccaaagcaagttgcttgaaataattgatgcaaggtga |
32616239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Complemental strand, 32616141 - 32616082
Alignment:
| Q |
368 |
ctttgtcagtgaattgcctgagtttttaggaggtaaatgtaaatgcgctgatgaaggagg |
427 |
Q |
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||||| |||||||||||| |||||||||||||||| |||| ||||||||| ||||||| |
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| T |
32616141 |
ctttgccagtgaattgccagagtttttaggaggtacttgtacctgcgctgatcaaggagg |
32616082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 5327798 - 5327884
Alignment:
| Q |
14 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgt |
100 |
Q |
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| T |
5327798 |
catcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgt |
5327884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 54773960 - 54774046
Alignment:
| Q |
14 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagaccacagcaaaaatcaatgt |
100 |
Q |
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|||||||||||| |||||||||||||| || |||||||||||||||| || ||||| |||||||||||||| |||||||| |||| |
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| T |
54773960 |
catcatcaatgctggttctggatttaggctattgtggaacactgtaaagtcattcctagatcccaagaccacctcaaaaatccatgt |
54774046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 26639361 - 26639429
Alignment:
| Q |
14 |
catcatcaatgcaggttctggatttagaatactgtggaacactgtaaaatccttccttgatcccaagac |
82 |
Q |
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| T |
26639361 |
catcatcaatgctggttcgggatttaggattttgtggaacactgttaagtccttccttgatcccaagac |
26639429 |
T |
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