View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_24 (Length: 435)

Name: NF19193_low_24
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_24
NF19193_low_24
[»] chr5 (12 HSPs)
chr5 (174-419)||(24122297-24122541)
chr5 (59-174)||(24118321-24118436)
chr5 (59-143)||(17660759-17660843)
chr5 (59-143)||(22183613-22183697)
chr5 (65-143)||(20740278-20740356)
chr5 (64-144)||(20127724-20127804)
chr5 (7-42)||(24118309-24118344)
chr5 (1-42)||(18221872-18221913)
chr5 (5-38)||(22082051-22082084)
chr5 (1-38)||(23624603-23624640)
chr5 (6-38)||(22183678-22183710)
chr5 (6-38)||(30605051-30605083)
[»] chr4 (21 HSPs)
chr4 (144-419)||(42452194-42452477)
chr4 (6-143)||(16654590-16654727)
chr4 (59-143)||(10197541-10197627)
chr4 (59-141)||(21479179-21479261)
chr4 (60-143)||(33746701-33746784)
chr4 (65-143)||(31971700-31971778)
chr4 (1-42)||(10197604-10197645)
chr4 (59-128)||(18006065-18006134)
chr4 (65-134)||(33744257-33744326)
chr4 (6-38)||(10683014-10683046)
chr4 (6-38)||(10896654-10896686)
chr4 (59-143)||(10683027-10683108)
chr4 (8-38)||(10723056-10723086)
chr4 (59-143)||(10723067-10723148)
chr4 (59-143)||(10896667-10896748)
chr4 (8-38)||(10936825-10936855)
chr4 (59-143)||(10936836-10936917)
chr4 (6-38)||(10718242-10718274)
chr4 (6-38)||(10932011-10932043)
chr4 (10-42)||(41786204-41786236)
chr4 (6-58)||(49975015-49975067)
[»] chr1 (12 HSPs)
chr1 (6-143)||(51471346-51471483)
chr1 (59-143)||(12753840-12753924)
chr1 (65-136)||(8282706-8282777)
chr1 (35-89)||(17355146-17355200)
chr1 (85-143)||(18389410-18389468)
chr1 (66-143)||(18379388-18379465)
chr1 (59-143)||(22347921-22348002)
chr1 (6-130)||(10339421-10339551)
chr1 (98-143)||(16950686-16950731)
chr1 (6-130)||(23477198-23477328)
chr1 (6-38)||(12753827-12753859)
chr1 (6-38)||(22347983-22348015)
[»] chr8 (6 HSPs)
chr8 (9-128)||(12813881-12814000)
chr8 (67-141)||(12376190-12376264)
chr8 (6-38)||(18622428-18622460)
chr8 (7-42)||(26537055-26537090)
chr8 (59-136)||(24849467-24849544)
chr8 (6-42)||(20254233-20254269)
[»] chr7 (22 HSPs)
chr7 (59-143)||(19295531-19295615)
chr7 (7-128)||(23297254-23297375)
chr7 (59-143)||(19353895-19353979)
chr7 (80-143)||(15711762-15711825)
chr7 (65-143)||(4793893-4793971)
chr7 (58-147)||(26193631-26193720)
chr7 (65-143)||(9567676-9567754)
chr7 (6-130)||(21261197-21261327)
chr7 (59-143)||(24814873-24814957)
chr7 (69-120)||(10252163-10252214)
chr7 (65-143)||(23579260-23579339)
chr7 (59-125)||(14688092-14688158)
chr7 (6-42)||(20992310-20992346)
chr7 (6-42)||(23082132-23082168)
chr7 (6-42)||(26132311-26132347)
chr7 (7-38)||(19295519-19295550)
chr7 (62-143)||(23174047-23174128)
chr7 (6-38)||(12326579-12326611)
chr7 (6-38)||(15709128-15709160)
chr7 (6-42)||(16207237-16207273)
chr7 (6-38)||(19353882-19353914)
chr7 (99-143)||(31268396-31268440)
[»] chr6 (21 HSPs)
chr6 (7-143)||(30425650-30425777)
chr6 (6-143)||(20764257-20764395)
chr6 (58-130)||(21316901-21316973)
chr6 (59-146)||(18152051-18152138)
chr6 (66-143)||(24542441-24542518)
chr6 (69-143)||(16308665-16308739)
chr6 (59-143)||(28624591-28624675)
chr6 (59-136)||(28622911-28622988)
chr6 (6-38)||(19077910-19077942)
chr6 (6-42)||(25970444-25970480)
chr6 (6-42)||(25974884-25974920)
chr6 (6-38)||(34639566-34639598)
chr6 (59-130)||(11961249-11961322)
chr6 (7-37)||(12039071-12039101)
chr6 (1-38)||(29253041-29253078)
chr6 (6-38)||(12385218-12385250)
chr6 (6-38)||(13196091-13196123)
chr6 (6-38)||(15930208-15930240)
chr6 (6-38)||(19894028-19894060)
chr6 (6-42)||(28622965-28623001)
chr6 (6-42)||(33666558-33666594)
[»] scaffold0064 (3 HSPs)
scaffold0064 (61-143)||(52237-52319)
scaffold0064 (58-143)||(45263-45348)
scaffold0064 (6-38)||(45328-45360)
[»] chr3 (20 HSPs)
chr3 (59-143)||(214390-214474)
chr3 (65-143)||(7495243-7495321)
chr3 (59-143)||(17042055-17042139)
chr3 (65-143)||(7478480-7478558)
chr3 (66-143)||(3444349-3444426)
chr3 (75-148)||(14405995-14406068)
chr3 (62-143)||(25020179-25020260)
chr3 (59-148)||(31650464-31650553)
chr3 (59-143)||(15674133-15674217)
chr3 (59-144)||(8225863-8225945)
chr3 (65-143)||(13920289-13920367)
chr3 (6-130)||(979643-979773)
chr3 (7-130)||(286162-286291)
chr3 (6-42)||(3551835-3551871)
chr3 (6-38)||(8225850-8225882)
chr3 (6-38)||(18477861-18477893)
chr3 (7-38)||(214455-214486)
chr3 (62-143)||(11657082-11657160)
chr3 (65-143)||(13914564-13914642)
chr3 (59-142)||(18477874-18477954)
[»] chr2 (12 HSPs)
chr2 (59-143)||(27108223-27108307)
chr2 (59-138)||(27111812-27111891)
chr2 (59-128)||(20645604-20645673)
chr2 (59-136)||(24311155-24311232)
chr2 (66-134)||(19197637-19197705)
chr2 (62-136)||(31588263-31588337)
chr2 (59-143)||(36397788-36397869)
chr2 (6-38)||(36397850-36397882)
chr2 (1-43)||(26859345-26859387)
chr2 (1-38)||(27108205-27108242)
chr2 (6-42)||(19197689-19197725)
chr2 (6-42)||(31588247-31588283)
[»] scaffold0505 (1 HSPs)
scaffold0505 (66-143)||(9295-9373)
[»] scaffold0034 (1 HSPs)
scaffold0034 (65-143)||(50205-50283)
[»] scaffold0520 (4 HSPs)
scaffold0520 (58-141)||(5746-5829)
scaffold0520 (58-110)||(12001-12053)
scaffold0520 (6-42)||(5734-5770)
scaffold0520 (6-42)||(11989-12025)
[»] scaffold0423 (1 HSPs)
scaffold0423 (66-143)||(14348-14425)
[»] scaffold1001 (1 HSPs)
scaffold1001 (6-38)||(729-761)
[»] scaffold0226 (1 HSPs)
scaffold0226 (7-49)||(6888-6931)
[»] scaffold0008 (2 HSPs)
scaffold0008 (59-143)||(36334-36421)
scaffold0008 (59-143)||(41394-41478)
[»] scaffold0129 (1 HSPs)
scaffold0129 (6-38)||(16272-16304)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 174 - 419
Target Start/End: Original strand, 24122297 - 24122541
Alignment:
Q  174 ttttgctaaaatccattaagtttctactaactatgtcacctcaagatcttctagactattccaatgcttcaaaacccttttctaatcttataagcccata 273  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  24122297 ttttgctaaaatccattaagtt-ctactaactatgtcacctcaagatcttctagactattccaatgcttcagaacccttctctaatcttataagcccata 24122395  T
Q  274 aacttcctttgtctttcaacaaaggttattgctttcatttttcttaaaaacgataagattggactttgaagtcccacaacaaaataaatgctttagatca 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  24122396 aacttcctttgtctttcaacaaaggttattgctttcatttttcttaaaaacgataagattggactttgaagtcccacaacaaaagaaatgatttagatca 24122495  T
Q  374 tgaaaagctcattctttaattacttaatataattccatgacaataa 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  24122496 tgaaaagctcattctttaattacttaacataattccatgacaataa 24122541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 59 - 174
Target Start/End: Original strand, 24118321 - 24118436
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacacaatacaacccccta 158  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||| ||    
T  24118321 tgccaagatgttggaacagcatatccaacatcatacataaatatttgttttatcaataatgaaaccaatacacaaatatctaacacaatacaaccccgta 24118420  T
Q  159 ttatcacggttgctat 174  Q
    |||||| |||||||||    
T  24118421 ttatcatggttgctat 24118436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 17660843 - 17660759
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| ||||||||||| | ||||||||||||| ||| ||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  17660843 tgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataatgaagccaatatacaaatatccaaca 17660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 22183697 - 22183613
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||| |||||||| | ||||||||||||||||| | ||||| |||||   | |||||||||||||| |||||| ||||||    
T  22183697 tgccaagatattggaacatcgtatccaacatcatacatgagtatttgttttagtgacaatgaagccaatactcaaatacccaaca 22183613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 20740356 - 20740278
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||   |||||||||||| |||| ||||||| ||||| ||| ||||||| ||| ||| ||||||||||||    
T  20740356 gatgttggaacattgtatccaacatcacacatgaatatttgttttagcaaaaatgaagtcaacacataaatatccaaca 20740278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 20127724 - 20127804
Alignment:
Q  64 agatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacac 144  Q
    ||||||||||||| | ||||||||||| || || ||||||| ||||| ||| | ||| ||||| | |||||||||||||||    
T  20127724 agatgttggaacatcgtatccaacatcttaaatgaatatttgttttagcaaaagtgaggccaacaaacaaatatccaacac 20127804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 24118309 - 24118344
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||||||||||||||| |||||    
T  24118309 cacactgaaccgtgccaagatgttggaacagcatat 24118344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18221872 - 18221913
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||| |||||||||||| | ||||||||||||||||||||||    
T  18221872 acatggcacactgaaccattccaagatgttggaacatcatat 18221913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 22082084 - 22082051
Alignment:
Q  5 agcacactgaaccgtgccaagatgttggaacatc 38  Q
    ||||||||||||||||||| ||||||||||||||    
T  22082084 agcacactgaaccgtgccaggatgttggaacatc 22082051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23624603 - 23624640
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  23624603 acatggcacactgaaccgtgccaggatgttggaacatc 23624640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 22183710 - 22183678
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||| ||||||||||    
T  22183710 gcacactgaaccgtgccaagatattggaacatc 22183678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 30605083 - 30605051
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  30605083 gcacactgaaccgtgccaggatgttggaacatc 30605051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 419
Target Start/End: Complemental strand, 42452477 - 42452194
Alignment:
Q  144 caatacaaccccctattatcacggttgctattttgctaaaatccattaagtttctactaactatgtcacctcaagatcttctagactattccaatgcttc 243  Q
    ||||||||||||||||||||||  ||||||| |||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  42452477 caatacaaccccctattatcacatttgctatgttgctaaaattcattaagtt-ctactaactatgtcacctcaaggccttctagactattccaatgcttc 42452379  T
Q  244 aaaacccttttctaatcttataagcccataaacttcctttgtc----tttcaacaaaggttattgctttcatttttcttaaaaacgata-----agattg 334  Q
    ||||||||| |||||||||||||| ||||||||||||||||||    |||||||||||||||||||||| |||||||||||||||||||     ||||||    
T  42452378 aaaacccttgtctaatcttataagtccataaacttcctttgtcttaatttcaacaaaggttattgctttgatttttcttaaaaacgataagattagattg 42452279  T
Q  335 gactttgaagtcccacaacaaaataaatgctttagatcatgaaaagctcattctttaattacttaatataattccatgacaataa 419  Q
    ||||||||| ||||||||||||| ||||| |||| || ||| ||||| |||||||| ||||||| | ||||||||||||||||||    
T  42452278 gactttgaaatcccacaacaaaagaaatgatttaaattatggaaagcccattctttgattactttacataattccatgacaataa 42452194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 16654727 - 16654590
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatattta 105  Q
    |||||||||||  ||||| ||||||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||| |||||||     
T  16654727 gcacactgaactatgccaggatgttgaaacatcatatccaacatcgtacaagatgccaagatgttggaacaacatatccaacatcgtacatgaatatttg 16654628  T
Q  106 ttttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  16654627 ttttagcaataatgaagccaatacacaaatatccaaca 16654590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 10197627 - 10197541
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataat--gaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| |||||||||||||||| || ||||||| ||||| |||||||  |||| ||||||||||||||||||||    
T  10197627 tgccaagatgttggaacatcatatccaacatcataaatgaatatttgttttagcaataatgagaagtcaatacacaaatatccaaca 10197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 21479179 - 21479261
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaa 141  Q
    |||||||||||||||||| | |||||||||| |||||| | ||||| ||||| ||| |||||||||||||| |||||| ||||    
T  21479179 tgccaagatgttggaacatcctatccaacattatacatgagtatttgttttaacaacaatgaagccaatactcaaatacccaa 21479261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 33746701 - 33746784
Alignment:
Q  60 gccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||| |||||| ||||| | ||||||||||||||||| | ||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  33746701 gccaggatgttagaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactcaaatacccaaca 33746784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 31971700 - 31971778
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| | ||| |||||||| |||| ||||||||||||| ||| | ||||| ||| ||||||||||||||||    
T  31971700 gatgttggaacatcgtatacaacatcacacatgaatatttattttagcaaaagtgaagtcaacacacaaatatccaaca 31971778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10197645 - 10197604
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  10197645 acatggcacactgaaccgtgccaagatgttggaacatcatat 10197604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 18006134 - 18006065
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaata 128  Q
    |||||| ||||||||||| | ||||||||||||| ||| ||||||| |||||  ||||||||||||||||    
T  18006134 tgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagaaataatgaagccaata 18006065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 33744257 - 33744326
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaa 134  Q
    |||||||||||| | ||||||||||||||||| | ||||| ||||| ||| ||| |||||||||| ||||    
T  33744257 gatgttggaacatcttatccaacatcatacatgagtatttgttttagcaacaattaagccaatactcaaa 33744326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 10683014 - 10683046
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  10683014 gcacactgaaccgtgccaagatgttggaacatc 10683046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 10896654 - 10896686
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  10896654 gcacactgaaccgtgccaagatgttggaacatc 10896686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10683027 - 10683108
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | |||||||   ||||||| | ||||| ||||| ||| ||||||||||||||  ||||| ||||||    
T  10683027 tgccaagatgttggaacatcgtatccaa---catacatgagtatttgttttagcaacaatgaagccaataccgaaatacccaaca 10683108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 10723056 - 10723086
Alignment:
Q  8 acactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||    
T  10723056 acactgaaccgtgccaagatgttggaacatc 10723086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10723067 - 10723148
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | |||||||   ||||||| | ||||| || || ||| ||||||||||||||  ||||||||||||    
T  10723067 tgccaagatgttggaacatcgtatccaa---catacatgactatttgttctagcaacaatgaagccaatactgaaatatccaaca 10723148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10896667 - 10896748
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | |||||||   ||||||| | ||||| ||||| ||| ||||||||||||||  ||||| ||||||    
T  10896667 tgccaagatgttggaacatcgtatccaa---catacatgagtatttgttttagcaacaatgaagccaataccgaaatacccaaca 10896748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 38
Target Start/End: Original strand, 10936825 - 10936855
Alignment:
Q  8 acactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||    
T  10936825 acactgaaccgtgccaagatgttggaacatc 10936855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 10936836 - 10936917
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | |||||||   ||||||| | ||||| || || ||| ||||||||||||||  ||||||||||||    
T  10936836 tgccaagatgttggaacatcgtatccaa---catacatgactatttgttctagcaacaatgaagccaatactgaaatatccaaca 10936917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 10718242 - 10718274
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  10718242 gcacactgaaccgtgccaggatgttggaacatc 10718274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 10932011 - 10932043
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  10932011 gcacactgaaccgtgccaggatgttggaacatc 10932043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 41786204 - 41786236
Alignment:
Q  10 actgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||| ||||||||||||||||||    
T  41786204 actgaaccgtgccaggatgttggaacatcatat 41786236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 49975015 - 49975067
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaaga 58  Q
    |||||||||| ||||||| |||||||||||||| ||| ||| || ||||||||    
T  49975015 gcacactgaatcgtgccaggatgttggaacatcgtatccaacattgtacaaga 49975067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 51471483 - 51471346
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatattta 105  Q
    |||||||||||||||||| ||||||||||| |||||| ||| || |||||| |||||||||||||| |||||||||||||||||  ||||| || ||||     
T  51471483 gcacactgaaccgtgccaggatgttggaacttcatatccaacatcgtacaacatgccaagatgttgaaacaacatatccaacatggtacatgaacatttg 51471384  T
Q  106 ttttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  51471383 ttttagcaataatgaagtcaatacacaaatatccaaca 51471346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 12753840 - 12753924
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||| |||||||||||| | |||||||||||||| || | ||||| ||||| ||| ||||||||||| || |||||| ||||||    
T  12753840 tgccaggatgttggaacatcgtatccaacatcatatatgagtatttgttttagcaacaatgaagccaacactcaaatacccaaca 12753924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 8282706 - 8282777
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaata 136  Q
    |||||||||||| | ||||||||||||||||| | ||||| ||||| ||| ||||| |||||||| ||||||    
T  8282706 gatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaggccaatactcaaata 8282777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 17355200 - 17355146
Alignment:
Q  35 catcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacat 89  Q
    |||||||| ||| || ||||||||| ||| |||||||||||||||||||||||||    
T  17355200 catcatatccaacatcgtacaagataccatgatgttggaacaacatatccaacat 17355146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 18389468 - 18389410
Alignment:
Q  85 aacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| | ||| ||||||| ||||| ||||||||| ||||||||||||||||||||||    
T  18389468 aacatcttgcatgaatatttgttttagcaataatgaggccaatacacaaatatccaaca 18389410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 18379465 - 18379388
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| |||| | ||||||||||| | ||| ||||||| ||||| ||||||||| ||||| ||||||||| ||||||    
T  18379465 atgttgaaacatcgtatccaacatcttgcatgaatattttttttaacaataatgaggccaacacacaaatacccaaca 18379388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 22348002 - 22347921
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| ||||| | ||||||||||   |||| | ||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  22348002 tgccaagatgttagaacatcgtatccaacat---acatgagtatttgttttagcaacaatgaagccaatacccaaatacccaaca 22347921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 10339551 - 10339421
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtaca-agatgcc---aagatgttggaacaacatatccaacat--catacataaa 99  Q
    ||||||||||||||| ||||||||||||||||| ||| ||| ||  |||| | |||||   || |||||||||||   ||||||||||  ||  |||  |    
T  10339551 gcacactgaaccgtgtcaagatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggaacatagtatccaacatcgcaatcatgga 10339452  T
Q  100 tatttattttatcaataatgaagccaataca 130  Q
    ||||||||||| |||||||| ||||||||||    
T  10339451 tatttattttagcaataatgcagccaataca 10339421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 16950686 - 16950731
Alignment:
Q  98 aatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  16950686 aatatttgttttaacaataatgaggccaatatacaaatatccaaca 16950731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 23477328 - 23477198
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtac-aagatgcc---aagatgttggaacaacatatccaaca--tcatacataaa 99  Q
    ||||| ||||||||||||||||||||||||||  ||||||| ||  ||| ||||||||   || |||||||||||   |||||||||   |||| || ||    
T  23477328 gcacattgaaccgtgccaagatgttggaacattgtattcaacattatacaaagatgcctgaaacatgttggaacatagtatccaacaacacatatatgaa 23477229  T
Q  100 tatttattttatcaataatgaagccaataca 130  Q
    ||||| ||||| ||| |||| ||||||||||    
T  23477228 tatttgttttagcaacaatgcagccaataca 23477198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 12753827 - 12753859
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  12753827 gcacactgaaccgtgccaggatgttggaacatc 12753859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 22348015 - 22347983
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    ||||||||||||||||||||||||| |||||||    
T  22348015 gcacactgaaccgtgccaagatgttagaacatc 22347983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 12814000 - 12813881
Alignment:
Q  9 cactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatatttattt 108  Q
    |||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||   | ||||| |||    
T  12814000 cactgaaccgtgccaagatgttggaacatcattttcaacatcgtacaagatgccaggatgttggaacaacatatccaacatcatactagagtatttgttt 12813901  T
Q  109 tatcaataatgaagccaata 128  Q
    || |||||||||||||||||    
T  12813900 tagcaataatgaagccaata 12813881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 12376264 - 12376190
Alignment:
Q  67 tgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaa 141  Q
    |||||||||| | ||||||||||| | ||| ||||||| ||||| ||||||||| ||||| | ||||||||||||    
T  12376264 tgttggaacatcttatccaacatcttgcatgaatatttgttttagcaataatgaggccaacatacaaatatccaa 12376190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 18622428 - 18622460
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  18622428 gcacactgaaccgtgccaagatgttggaacatc 18622460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 26537055 - 26537090
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatcatat 42  Q
    ||||||||||||||||| ||||||||||||||||||    
T  26537055 cacactgaaccgtgccatgatgttggaacatcatat 26537090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 24849544 - 24849467
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaata 136  Q
    |||||| ||||| |||||   ||||||||||||||||| | ||||| ||||| ||| ||||||| |||||| ||||||    
T  24849544 tgccaaaatgttagaacattgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaata 24849467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 20254269 - 20254233
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    ||||||||||||||| || ||||||||||||||||||    
T  20254269 gcacactgaaccgtgtcaggatgttggaacatcatat 20254233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 19295531 - 19295615
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | ||||||||||||||||| | ||||| ||||| ||||||||||||||| ||||||||||||||||    
T  19295531 tgccaagatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaataatgaagccaacacacaaatatccaaca 19295615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 23297254 - 23297375
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatatttat 106  Q
    ||||||||||||||||||||||||| |||||||| | ||| || ||| ||| ||||  |||||||||||||||||| |||||||| ||   | ||||| |    
T  23297254 cacactgaaccgtgccaagatgttgaaacatcatttccaacatcgtataagttgcccggatgttggaacaacatatgcaacatcaaactagagtatttgt 23297353  T
Q  107 tttatcaataatgaagccaata 128  Q
    |||| |||||||||||||||||    
T  23297354 tttagcaataatgaagccaata 23297375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 19353895 - 19353979
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| ||||||||||| | ||||||| ||||| ||| ||||||| ||||| || |||||||||||||| ||||||||||||||    
T  19353895 tgccaacatgttggaacatcgtatccaatatcatgcatgaatatttgttttagcagtaatgaagccaatatacaaatatccaaca 19353979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 15711762 - 15711825
Alignment:
Q  80 tatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||| ||||||    
T  15711762 tatccaacatcaaacatgaatatttgttttagcaataatgaagccaatacacaaatacccaaca 15711825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 4793971 - 4793893
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| | |||||||||||| |||| ||||||| ||||| ||| | ||||||||| ||||||||||||||||    
T  4793971 gatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatccaaca 4793893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 26193720 - 26193631
Alignment:
Q  58 atgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacacaat 147  Q
    ||||||||||||||||||| | ||||||||||||||||| | ||||| ||||| ||| |||||| | ||| | |||||| ||||||||||    
T  26193720 atgccaagatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaacctaatgctcaaatacccaacacaat 26193631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 9567676 - 9567754
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| | |||||||||||| |||| ||||||| ||||| ||| | ||| ||||| ||||||||||||||||    
T  9567676 gatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaggccaacacacaaatatccaaca 9567754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 21261197 - 21261327
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtaca-agatgcc---aagatgttggaacaacatatccaacatcata--cataaa 99  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||  |||| | |||||   || |||||||||||   |||||||||||| |  ||| ||    
T  21261197 gcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagaaatgcctaaaacatgttggaacatagtatccaacatcacaatcatgaa 21261296  T
Q  100 tatttattttatcaataatgaagccaataca 130  Q
    ||||||||||| |||| ||| ||||||||||    
T  21261297 tatttattttagcaatgatgcagccaataca 21261327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 24814873 - 24814957
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||| | || | ||||||||||||||||| | ||||| ||||| ||| ||||||||||||||  ||||| ||||||    
T  24814873 tgccaagatgttgaagcatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactaaaatacccaaca 24814957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 10252163 - 10252214
Alignment:
Q  69 ttggaacaacatatccaacatcatacataaatatttattttatcaataatga 120  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||| |||||    
T  10252163 ttggaacatcgtatccaacatcatacatgaatatttattttatcaacaatga 10252214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 23579339 - 23579260
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaataca-caaatatccaaca 143  Q
    |||||||||||||||| |||||||||  | |  ||||||||||||| |||||||||| |||||||| |||||| ||||||    
T  23579339 gatgttggaacaacatttccaacatctaataagaatatttattttagcaataatgaatccaatacatcaaatacccaaca 23579260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 14688092 - 14688158
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagcca 125  Q
    |||||| ||||||||||| | ||||||||||||| ||| ||||||| ||||| ||||||| ||||||    
T  14688092 tgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagcaataataaagcca 14688158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 20992310 - 20992346
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  20992310 gcacactgaaccgtgccaggatgttggaacatcatat 20992346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 23082168 - 23082132
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  23082168 gcacactgaaccgtgccaggatgttggaacatcatat 23082132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 26132347 - 26132311
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26132347 gcacactgaaccgtgccaggatgttggaacatcatat 26132311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 19295519 - 19295550
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatc 38  Q
    ||||||||||||||||||||||||||||||||    
T  19295519 cacactgaaccgtgccaagatgttggaacatc 19295550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 23174128 - 23174047
Alignment:
Q  62 caagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||| |||||   ||||||||||||||||| | ||||| ||||| ||| ||||||| |||||  |||||| ||||||    
T  23174128 caagatgttagaacattgtatccaacatcatacatgagtatttgttttaccaacaatgaagtcaataatcaaatacccaaca 23174047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 12326579 - 12326611
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  12326579 gcacactgaaccgtgccaggatgttggaacatc 12326611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 15709128 - 15709160
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  15709128 gcacactgaaccgtgccaggatgttggaacatc 15709160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 16207273 - 16207237
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  16207273 gcacactgaaccatgccaggatgttggaacatcatat 16207237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 19353882 - 19353914
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    ||||||||||||||||||| |||||||||||||    
T  19353882 gcacactgaaccgtgccaacatgttggaacatc 19353914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 31268440 - 31268396
Alignment:
Q  99 atatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| ||||| ||||||||| ||||| ||||||||||||||||    
T  31268440 atatttgttttaacaataatgaggccaaaacacaaatatccaaca 31268396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 30425650 - 30425777
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatatttat 106  Q
    |||| ||||| ||||||||||||||||||||||||| ||| |   ||||||||| ||||||||||||||||||||| ||         ||||||||||||    
T  30425650 cacattgaactgtgccaagatgttggaacatcatatccaacaccatacaagatgtcaagatgttggaacaacatattca---------ataaatatttat 30425740  T
Q  107 tttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||| ||||||||||| ||||||||||||||| ||||    
T  30425741 tttagcaataatgaagtcaatacacaaatatctaaca 30425777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 6 - 143
Target Start/End: Complemental strand, 20764395 - 20764257
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtacaagatgccaagatgttggaacaacatatccaacatcatacataaatattta 105  Q
    |||||||||||| ||||| ||||||| ||||| |||| ||| || ||||||||||  | ||| |||||||||||| |||||||||| |||  | |||||     
T  20764395 gcacactgaaccttgccaggatgttgaaacattatatccaacatcgtacaagatgataggatattggaacaacatttccaacatcaaacaagagtatttg 20764296  T
Q  106 ttttatcaataatgaagccaataca-caaatatccaaca 143  Q
    ||||| ||||||||||||||||||| |||||| ||||||    
T  20764295 ttttagcaataatgaagccaatacatcaaatacccaaca 20764257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 21316973 - 21316901
Alignment:
Q  58 atgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaataca 130  Q
    |||||| |||||||||||| ||||||||||||||||||  ||||||| ||||| |||||||||||||||||||    
T  21316973 atgccaggatgttggaacatcatatccaacatcatacaagaatatttgttttagcaataatgaagccaataca 21316901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 146
Target Start/End: Complemental strand, 18152138 - 18152051
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacacaa 146  Q
    |||||| ||||| ||||| | ||||||||||||| ||| |||||||||||||  ||||| |||||||||| ||||||||| |||||||    
T  18152138 tgccaacatgttagaacatcgtatccaacatcatgcatgaatatttattttagaaataaggaagccaatatacaaatatctaacacaa 18152051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 24542441 - 24542518
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||| | ||||||||||||||||| | ||||| ||||| ||| ||||||| |||||| |||||||||||||    
T  24542441 atgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaatatccaaca 24542518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 16308739 - 16308665
Alignment:
Q  69 ttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||| | |||||||||||| |||| ||||||| ||||| ||| | ||||||||| ||||||||||||||||    
T  16308739 ttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatccaaca 16308665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 28624591 - 28624675
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||| |||  | ||||||||||||||||| | ||||| ||||| ||| ||||||| || ||| |||||||||||||    
T  28624591 tgccaagatgttgaaacgtcgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcattactcaaatatccaaca 28624675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 28622988 - 28622911
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaata 136  Q
    |||||||||||| |||||  ||||||| |||||||||| | ||||| ||||| ||| ||||||| |||||| ||||||    
T  28622988 tgccaagatgttagaacataatatccagcatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaata 28622911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 19077910 - 19077942
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  19077910 gcacactgaaccgtgccaagatgttggaacatc 19077942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 25970444 - 25970480
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  25970444 gcacactgaaccgtgccaagatgttggagcatcatat 25970480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 25974884 - 25974920
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||||||||||||| ||||||||    
T  25974884 gcacactgaaccgtgccaagatgttggagcatcatat 25974920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 34639598 - 34639566
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  34639598 gcacactgaaccgtgccaagatgttggaacatc 34639566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 11961249 - 11961322
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcata--cataaatatttattttatcaataatgaagccaataca 130  Q
    ||||| |||||||||||| | |||||||||||| |  |||| |||||||||||| |||||||| | ||||||||    
T  11961249 tgccaggatgttggaacatcgtatccaacatcacaaacatagatatttattttaacaataatgcaaccaataca 11961322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 37
Target Start/End: Complemental strand, 12039101 - 12039071
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacat 37  Q
    |||||||||||||||||||||||||||||||    
T  12039101 cacactgaaccgtgccaagatgttggaacat 12039071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29253078 - 29253041
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  29253078 acatggcacactgaaccgtgccaggatgttggaacatc 29253041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 12385250 - 12385218
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  12385250 gcacactgaaccgtgccaggatgttggaacatc 12385218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 13196091 - 13196123
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  13196091 gcacactgaaccgtgccaggatgttggaacatc 13196123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 15930240 - 15930208
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  15930240 gcacactgaaccgtgccaggatgttggaacatc 15930208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 19894060 - 19894028
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||| ||||    
T  19894060 gcacactgaaccgtgccaagatgttggagcatc 19894028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 28623001 - 28622965
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  28623001 gcacactgaaccgtgccaagatgttagaacataatat 28622965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 33666558 - 33666594
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  33666558 gcacactgaaccgtgccaggatgttggagcatcatat 33666594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 52319 - 52237
Alignment:
Q  61 ccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||| | ||||||||||||||||| ||||||| ||||  ||| | ||||||||| ||||||||||||||||    
T  52319 ccaagatgttggaacatcgtatccaacatcatacatgaatatttgtttttgcaaaagtgaagccaacacacaaatatccaaca 52237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 45348 - 45263
Alignment:
Q  58 atgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||| |||||  || | ||||| ||| ||||||||||||||||    
T  45348 atgccaagatgttggaacatcgtatccaacatcatacatgaatatttgttttagaaaaagtgaagtcaacacacaaatatccaaca 45263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 45360 - 45328
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||| ||||||||||||||||||||    
T  45360 gcacactgaaccatgccaagatgttggaacatc 45328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 214474 - 214390
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | ||||||||||||||||| | ||||| ||||| ||| ||||||| |||||| |||||| ||||||    
T  214474 tgccaagatgttggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagtcaatactcaaatacccaaca 214390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 7495321 - 7495243
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||| |||||| |||||||||||| |||| ||||||| ||||| ||| | ||||||||| ||||||||||||||||    
T  7495321 gatgttgtaacaacgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatccaaca 7495243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 17042139 - 17042055
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||| ||||| |||||| | ||||||||||||||||| | ||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  17042139 tgccaggatgtcggaacatcgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactcaaatacccaaca 17042055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 7478558 - 7478480
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| | |||||||||||| |||| ||||||| ||||| ||| | | ||||||| ||||||||||||||||    
T  7478558 gatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtaaagccaacacacaaatatccaaca 7478480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 3444426 - 3444349
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||| |||||| | ||||||||||| | ||| ||||||||||||| ||||||||| || |||| ||||||||||||||    
T  3444426 atgtaggaacatcgtatccaacatcttgcatgaatatttattttagcaataatgacgctaatatacaaatatccaaca 3444349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 14406068 - 14405995
Alignment:
Q  75 caacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacacaata 148  Q
    |||||||||||||||| | ||| ||||||| ||||| ||||||| || |||||| |||||||||||||| ||||    
T  14406068 caacatatccaacatcttgcatgaatatttgttttagcaataataaaaccaatatacaaatatccaacataata 14405995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 25020179 - 25020260
Alignment:
Q  62 caagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||||| | ||||||||||||||||| | ||||| ||||| ||| ||||| ||||||||  ||||| ||||||    
T  25020179 caagatgttggaacatcgtatccaacatcatacatgagtatttgttttaacaacaatgaggccaatacctaaatacccaaca 25020260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 31650464 - 31650553
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacacaata 148  Q
    |||||||||||||||||  | ||||||||||||||||  | ||||| ||||  ||| |||||||||||||| |||||| |||||| ||||    
T  31650464 tgccaagatgttggaacgtcgtatccaacatcatacaagagtatttgtttttgcaacaatgaagccaatactcaaatacccaacaaaata 31650553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 15674217 - 15674133
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||| ||| | ||||||||||| ||||| | ||||| ||||| ||| ||||||| |||||| |||||| ||||||    
T  15674217 tgccaagatgttgggacatcgtatccaacatcttacatgagtatttgttttagcaacaatgaagtcaatactcaaatacccaaca 15674133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 8225863 - 8225945
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaacac 144  Q
    |||||||||||||||||| | ||||||||||   |||| | ||||| ||||| ||| |||||||||||||| |||||| |||||||    
T  8225863 tgccaagatgttggaacatcgtatccaacat---acatgagtatttgttttagcaaaaatgaagccaatacccaaatacccaacac 8225945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 13920289 - 13920367
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||| ||||| | |||||||||||| |||| ||||||| ||||| ||| | ||||||||| ||||||||||| ||||    
T  13920289 gatgttagaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatctaaca 13920367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 979773 - 979643
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatattcaaaatggtaca-agatgcc---aagatgttggaacaacatatccaacatcata--cataaa 99  Q
    ||||||||||||||||| ||||||||||||||||||| ||| ||  |||| | || ||   || |||||||||||   |||||||||||| |  |||| |    
T  979773 gcacactgaaccgtgccgagatgttggaacatcatatccaacatcttacagaaatacctaaaatatgttggaacatagtatccaacatcacaatcataga 979674  T
Q  100 tatttattttatcaataatgaagccaataca 130  Q
    ||||| ||||| |||||||| ||||||||||    
T  979673 tatttgttttagcaataatgtagccaataca 979643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 286291 - 286162
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatcatattcaaaatggtaca-agatgcc---aagatgttggaacaacatatccaacat--catacataaat 100  Q
    ||||||||||||||| | |||||||||||||| ||| ||| ||  |||| |||||||   || |||||||||||   ||||||||||  || |||| |||    
T  286291 cacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcctgaaacatgttggaacatagtatccaacatcacaaacatgaat 286192  T
Q  101 atttattttatcaataatgaagccaataca 130  Q
    |||||||||| |||| ||| ||||||||||    
T  286191 atttattttagcaatgatgcagccaataca 286162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 3551871 - 3551835
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3551871 gcacactgaaccgtgccacgatgttggaacatcatat 3551835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 8225850 - 8225882
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  8225850 gcacactgaaccgtgccaagatgttggaacatc 8225882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 18477861 - 18477893
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  18477861 gcacactgaaccgtgccaagatgttggaacatc 18477893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 214486 - 214455
Alignment:
Q  7 cacactgaaccgtgccaagatgttggaacatc 38  Q
    ||||||||||||||||||||||||||||||||    
T  214486 cacactgaaccgtgccaagatgttggaacatc 214455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 11657082 - 11657160
Alignment:
Q  62 caagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||||||| | ||||||||||   |||| | ||||||||||| ||| |||||||| ||||| |||||| ||||||    
T  11657082 caagatgttggaacatcgtatccaacat---acatgagtatttattttagcaacaatgaagctaatacccaaatacccaaca 11657160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 13914564 - 13914642
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||| ||||||| | |||||||||||| |||| ||||||||||||| ||| | |||| ||||  |||||||||| ||||    
T  13914564 gatgatggaacatcgtatccaacatcacacatgaatatttattttagcaaaagtgaaaccaaagcacaaatatctaaca 13914642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 18477874 - 18477954
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaac 142  Q
    |||||||||||||||||| | |||||||   ||||||| | ||||| ||||| ||| |||||||||||||  |||||| |||||    
T  18477874 tgccaagatgttggaacatcgtatccaa---catacatgagtatttgttttagcaacaatgaagccaatatccaaatacccaac 18477954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 27108223 - 27108307
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||| |||||||||||| | |||||||||||||  || |||||||||||||  |||||||||| ||||| ||||||||||||||    
T  27108223 tgccaggatgttggaacatcgtatccaacatcatgtatgaatatttattttagaaataatgaagtcaatatacaaatatccaaca 27108307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 27111812 - 27111891
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatc 138  Q
    ||||| |||||||||||| | |||||||||||||  || ||||||| ||||| |||||||||| |||||| |||||||||    
T  27111812 tgccaggatgttggaacatcgtatccaacatcatttatgaatatttgttttagcaataatgaaaccaatatacaaatatc 27111891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 20645673 - 20645604
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaata 128  Q
    |||||| ||||||||||| | ||||||||||||| ||| ||||||| |||||  ||||||||||||||||    
T  20645673 tgccaacatgttggaacatcgtatccaacatcatgcatgaatatttgttttagaaataatgaagccaata 20645604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 24311232 - 24311155
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaata 136  Q
    ||||| ||||||||||||   ||||||||||||||||| | ||||| ||||| ||| |||||||||||||| ||||||    
T  24311232 tgccaggatgttggaacattgtatccaacatcatacatgagtatttgttttagcaacaatgaagccaatactcaaata 24311155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 19197705 - 19197637
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaa 134  Q
    ||||||||||| ||||||||||||||   || ||||||| ||||| ||||||||||||||||| |||||    
T  19197705 atgttggaacatcatatccaacatcaagtatgaatattttttttagcaataatgaagccaatatacaaa 19197637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 31588263 - 31588337
Alignment:
Q  62 caagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaata 136  Q
    |||||||||||||||  |||||||||||||||||| | ||||| ||||| ||| ||||| | |||||| ||||||    
T  31588263 caagatgttggaacattatatccaacatcatacatgagtatttgttttagcaacaatgaggtcaatactcaaata 31588337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 36397869 - 36397788
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | ||||||||||   |||| | ||||| ||||| ||| |||||||||||||| |||||| ||||||    
T  36397869 tgccaagatgttggaacatcgtatccaacat---acatgagtatttgttttagcaacaatgaagccaatacccaaatacccaaca 36397788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 36397882 - 36397850
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  36397882 gcacactgaaccgtgccaagatgttggaacatc 36397850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26859387 - 26859345
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatcatatt 43  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||    
T  26859387 acatggcacaatgaaccgtgccaagatgttggaacatcgtatt 26859345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27108205 - 27108242
Alignment:
Q  1 acatagcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  27108205 acatggcacactgaaccgtgccaggatgttggaacatc 27108242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 19197725 - 19197689
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||||||| || |||||||||||||||||    
T  19197725 gcacactgaaccgtgctaacatgttggaacatcatat 19197689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 31588247 - 31588283
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  31588247 gcacactgaaccgtgacaagatgttggaacattatat 31588283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 9373 - 9295
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaataca-caaatatccaaca 143  Q
    ||||||||||||||| |||||||||| |||  | ||||| ||||| ||||||||||||||||||| |||||||||||||    
T  9373 atgttggaacaacatttccaacatcaaacaagagtatttgttttagcaataatgaagccaatacaccaaatatccaaca 9295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 50283 - 50205
Alignment:
Q  65 gatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||| | |||||||||||| |||| ||||||| ||||| ||| | ||||||||| ||||||||||||||||    
T  50283 gatgttggaacatcgtatccaacatcacacatgaatatttgttttagcaaaagtgaagccaacacacaaatatccaaca 50205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 5746 - 5829
Alignment:
Q  58 atgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaa 141  Q
    |||||| |||||||||||| |||||||||||||||| || ||||||| |||||  || | |||||| ||||  |||||||||||    
T  5746 atgccaggatgttggaacatcatatccaacatcatatatgaatatttgttttaggaaaagtgaagctaatattcaaatatccaa 5829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 12001 - 12053
Alignment:
Q  58 atgccaagatgttggaacaacatatccaacatcatacataaatatttatttta 110  Q
    |||||| |||||||||||| |||||||||||||||| || ||||||| |||||    
T  12001 atgccaggatgttggaacatcatatccaacatcatatatgaatatttgtttta 12053  T

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Target: scaffold0520; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5734 - 5770
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  5734 gcacactgaaccatgccaggatgttggaacatcatat 5770  T

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Target: scaffold0520; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 11989 - 12025
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatcatat 42  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  11989 gcacactgaaccatgccaggatgttggaacatcatat 12025  T

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Target: scaffold0423 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0423
Description:

Target: scaffold0423; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 14348 - 14425
Alignment:
Q  66 atgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    ||||||||||| | ||||||||||| | ||| ||||||| |||||  |||||||| ||||| | ||||||||||||||    
T  14348 atgttggaacatcgtatccaacatcttgcatgaatatttgttttaaaaataatgaggccaacatacaaatatccaaca 14425  T

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Target: scaffold1001 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 729 - 761
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||||||||||||||||||    
T  729 gcacactgaaccgtgccaagatgttggaacatc 761  T

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Target: scaffold0226 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 6931 - 6888
Alignment:
Q  7 cacactgaaccgtgccaag-atgttggaacatcatattcaaaat 49  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||    
T  6931 cacactgaaccgtgccaaggatgttggaacatcatatccaaaat 6888  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 36334 - 36421
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaa---tatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | | || |||||||||||| ||   ||||| ||||| ||| ||||||| |||||| |||||| ||||||    
T  36334 tgccaagatgttggaacatcgtgtcaaacatcatacatgaatattattttttttagcaacaatgaagtcaatactcaaatacccaaca 36421  T

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Target: scaffold0008; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 41394 - 41478
Alignment:
Q  59 tgccaagatgttggaacaacatatccaacatcatacataaatatttattttatcaataatgaagccaatacacaaatatccaaca 143  Q
    |||||||||||||||||| | ||||||| || |||||| |  |||| ||||| ||| || ||||| ||||| |||||| ||||||    
T  41394 tgccaagatgttggaacatcgtatccaatattatacatgagcatttgttttagcaacaaagaagcaaatactcaaatacccaaca 41478  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 16272 - 16304
Alignment:
Q  6 gcacactgaaccgtgccaagatgttggaacatc 38  Q
    |||||||||||||||||| ||||||||||||||    
T  16272 gcacactgaaccgtgccaggatgttggaacatc 16304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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