View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_25 (Length: 425)
Name: NF19193_low_25
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 15689100 - 15689506
Alignment:
| Q |
1 |
caacagaaagaggatggaagaaagtggtttagaacctaggatgaaaaacacagataatttattttgaaacactcactgttgatttttaattcttaaagat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
15689100 |
caacagaaagaggatggaagaaagtggtttagaacctgggatgaaaaacgcagatactttgttttgaaacactcactattgatttttaattcttaaagat |
15689199 |
T |
|
| Q |
101 |
gattaagaagatgaaccttatttataggtgaagaacagctaaaatggttaaatgcaataagccaggtgtattacttgcaacatgcaagaggccaagtgta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15689200 |
gattaagaagatgaaccttatttataggtgaagaacagctaaaatggttaaatgcaataagccaggtgtattacttgcaacatacaagaggccaagtgta |
15689299 |
T |
|
| Q |
201 |
ttgcatgcaacaatttataattctatttgtcaccttaagcacatgcaacttccatgtgtctcacatgcaatgaggttgtgtgtcatcccattcaacaaga |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15689300 |
ttgcatgcaacaatttataattctacttgtcaccttaagcacatgcaacttccatgtgtctcacatgcaatgaggttgtgtgtcatcccattcaacaaga |
15689399 |
T |
|
| Q |
301 |
gaaaagggtcaagtatgggcccctcaatggcttgggtttgatccgtatttttggcttatgtcatatggtccaaatgaaaggggtgtttttctttagaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
15689400 |
gaaaagggtcaagtatgggcccctcaatggcttgggcttgattcgtatttttggcttatgtcagatggtctaaatgaaaggggtgtttttctttagaacc |
15689499 |
T |
|
| Q |
401 |
cccaaat |
407 |
Q |
| |
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||||||| |
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|
| T |
15689500 |
cccaaat |
15689506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 29202055 - 29201645
Alignment:
| Q |
1 |
caacagaaagaggatggaagaaagtggtttagaacctaggatgaaaaacacagataatttattttgaaacactcactgttgatttttaattcttaaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
29202055 |
caacagaaagaggatggaagaaagtggtttggaacctgggatgaaaaacgcagatactttgttttgaaacactcactattgatttttaattcttaaagat |
29201956 |
T |
|
| Q |
101 |
gattaagaagatgaa------ccttatttataggtgaagaacagctaaaatggttaaatgcaataagccaggtgtattacttgcaacatgcaagaggcca |
194 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
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|
| T |
29201955 |
gattaagaagatgaatatgaaccttatttataggtgaagaacagctaaaatggttaaatgcaagaagctaggtgtattacttgcaacatgcaagaggc-a |
29201857 |
T |
|
| Q |
195 |
agtgtattgcatgcaacaatttataattctatttgtcaccttaagcacatgcaacttccatgtgtctcacatgcaatgaggttgtgtgtcatcccattca |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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|
| T |
29201856 |
agtgtattgcatgcaacaatttataattctacttgtcaccttaagcacatgcaacttccatgtgtctcacatgcaaagaggttgtatgtcatcccattca |
29201757 |
T |
|
| Q |
295 |
acaagagaaaagggtcaagtatgggcccctcaatggcttgggtttgatccgtatttttggcttatgtcatatggtccaaatgaaaggggtgtttttcttt |
394 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
29201756 |
acaagag-aaagggtcaagtataggcccctcaatggcttgggcttgatccgtatttttggcttatgtcatatggtccaaatgaaattgatgtttttcttt |
29201658 |
T |
|
| Q |
395 |
agaacccccaaat |
407 |
Q |
| |
|
||| ||||||||| |
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|
| T |
29201657 |
agaccccccaaat |
29201645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 10731180 - 10731084
Alignment:
| Q |
181 |
catgcaagaggccaagtgtattgcatgcaacaatttataattctatttgtcaccttaagcacatgcaacttccatgtgtctcacatgcaatgaggtt |
277 |
Q |
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||||||||| | ||||||||||||||||||| | ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
10731180 |
catgcaagaagacaagtgtattgcatgcaactgtccataattctacttgtcactttaagcacatgcaacttccatttgtctcacatgcaataaggtt |
10731084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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