View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_low_26 (Length: 418)
Name: NF19193_low_26
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 170 - 400
Target Start/End: Complemental strand, 33634084 - 33633854
Alignment:
| Q |
170 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
269 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
33634084 |
gttcgcatccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttc |
33633985 |
T |
|
| Q |
270 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
369 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633984 |
tcaccgttgccttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
33633885 |
T |
|
| Q |
370 |
ttttcattatcggaagtgacgaagcttgatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33633884 |
ttttcattatcggaagtgacgaagcttgatt |
33633854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 33634240 - 33634151
Alignment:
| Q |
17 |
gaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33634240 |
gaagaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaaactcactgagtgacgagtgggaaatttcgttcgcacga |
33634151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 170 - 400
Target Start/End: Original strand, 29191750 - 29191979
Alignment:
| Q |
170 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgttttcctccgattctcctccgatctcaacttctcctacgtcattc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| | | |
|
|
| T |
29191750 |
gttcgcctccgtaaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcc |
29191849 |
T |
|
| Q |
270 |
tcaccgttgacttcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaa |
369 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
29191850 |
tcaccgttgcattcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaa |
29191948 |
T |
|
| Q |
370 |
ttttcattatcggaagtgacgaagcttgatt |
400 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
|
|
| T |
29191949 |
ttttgattatcggaagtgacgaagcttgatt |
29191979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 29191591 - 29191683
Alignment:
| Q |
20 |
gaaaagagataattcaaacaaatggcgggaacagttgcagtaagatcaa---------actcactgagtgacgagtgggaaatttcgttcgca |
103 |
Q |
| |
|
|||| |||| |||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
29191591 |
gaaaggagagaattcaaaaaaatggcgggaacagttgcagtgagatcaacaacaacaaactcactgagtgacgagtgggaaatttccttcgca |
29191683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University