View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_27 (Length: 413)
Name: NF19193_low_27
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 40376606 - 40377002
Alignment:
| Q |
1 |
acgagaagcaaatgcttagtctgcaactcatgttattgttggaagtgttcatggtttccatagaattcggtcatctagctctgtagctaagtattgtgct |
100 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376606 |
acgagaagcaaatgcttattctgcatctcatgttattgttggaagtgttcatggttttcatagaattcggtcatctagctctgtagctaagtattgtgct |
40376705 |
T |
|
| Q |
101 |
aaaaagttatccaaggactgttgtgttcttgctgtgaataatggaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgctgatgtacaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376706 |
aaaaagttatccaaggactgttgtgttcttgctgtgaataatggaaaggttgtgtacaagcgtgacagcttggcagcatcaactgttgctgatgtacaag |
40376805 |
T |
|
| Q |
201 |
gttttggatttttcttagttttggttaatgtggatctcatgattcatgaactcaatttaatctacagttattgattttgnnnnnnnngcttttgaaaggg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40376806 |
gttttggatttttcttagttttggttaatgtggatctcatgattcatgaactcaatttaatttacagttattgattttg-tttttttgcttttgaaaggg |
40376904 |
T |
|
| Q |
301 |
tttgatcgtcaacgtggaaatggtttgcttggttcaattcaattgacacatggtttgcttggttcgattcaattgacactcagtaagaatacaaaagt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40376905 |
tttgatcgtcaacgtggaaatggtttgcttggttcaattcaattgacacatggtttgcttggttcgattcaattgacactcagtaagaatacaaaagt |
40377002 |
T |
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