View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_29 (Length: 409)
Name: NF19193_low_29
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 40451753 - 40451359
Alignment:
| Q |
1 |
tcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40451753 |
tcaccatattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgat |
40451654 |
T |
|
| Q |
101 |
tttcatattattagtccttctcattctcaaaatcaaaactcagcaacaccaaattctcttttaggtttagtcaccacactacttcacaaatctaatgtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40451653 |
tttcatattattagtccttctcattctcaaaatcaaaactcagcaacagcaaattctcttttaggtttagtcaccacactacttcacaaatctaatgtag |
40451554 |
T |
|
| Q |
201 |
aaatacaaagcctcgccattaaaataacacctcgagttatttttgatgcacacaatcatttttctcgactatcagttactcttgttgcacgcaaactcac |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
40451553 |
aaatacaaagcctcgccattgaaataacacctcgagttatttgggatgcacacaatcatttttctcgactatcagttactcttgatgcacgcaaacttac |
40451454 |
T |
|
| Q |
301 |
ttctttactatcttctctacttacccacaaagttcagcaccttcaactttccataaatgatataaaatatcgaaatactacttgtgtgttacccc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40451453 |
ttctttactatcttctctacttacccacaaagttcagcaccttcaacttttcataaatgatataaaatatcgaaataccacttgtgtgttacccc |
40451359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 104
Target Start/End: Complemental strand, 31219190 - 31219136
Alignment:
| Q |
50 |
atattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
104 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||| |||||||| |
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| T |
31219190 |
atattagcaacaaagtggagatacttgtggacccaattacccgtctttgattttc |
31219136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 14729462 - 14729362
Alignment:
| Q |
5 |
catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
104 |
Q |
| |
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||||||||||| || ||| | || || |||||||| | ||| ||||||||||| |||||||||| ||||||||||| || |||||| ||| |||||||| |
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| T |
14729462 |
catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc |
14729363 |
T |
|
| Q |
105 |
a |
105 |
Q |
| |
|
| |
|
|
| T |
14729362 |
a |
14729362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 14740990 - 14740901
Alignment:
| Q |
6 |
atattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtct |
95 |
Q |
| |
|
|||||||||| || ||||| ||||| || || || | ||| || |||||| || |||||||||| ||||||||||| |||||||| |||| |
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| T |
14740990 |
atattctttctttactctcaaccaaagaggcggttagaacttcaatattatcaccaaagtggagatacttgtggactcaattatctgtct |
14740901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 17594025 - 17594125
Alignment:
| Q |
5 |
catattctttcatttctctccaccaaggatgctgtcaaaacatccatattagcaacaaagtggaggtacttgtggacccaattatccgtctatgattttc |
104 |
Q |
| |
|
||||||||||| || ||| | || || |||||||| | ||| ||||||||||| |||||||||| ||||||||||| || |||||| ||| |||||||| |
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| T |
17594025 |
catattctttctttactccctactaaagatgctgtaagaacttccatattagctacaaagtggaaatacttgtggacacatttatccatctttgattttc |
17594124 |
T |
|
| Q |
105 |
a |
105 |
Q |
| |
|
| |
|
|
| T |
17594125 |
a |
17594125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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