View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_3 (Length: 637)
Name: NF19193_low_3
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 117 - 622
Target Start/End: Complemental strand, 6997951 - 6997446
Alignment:
| Q |
117 |
gagggtagttaagagtcacatgaagattaaaaattagaaatttgcgaatagaggcacatgaagattagaaattccttattgagctggtaattataatcgc |
216 |
Q |
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| T |
6997951 |
gagggtagttaagagtcacatgaagattaaaaattagaaatttgcgaatagaggcacatgaagattagaaattccttattgagctggtaattataatcgc |
6997852 |
T |
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| Q |
217 |
atacacttgcacatattacaaatgtgccagaaattagtgagtcaactgtttcggcttatatgagtgtaaatgcaggtatattaaatatttattgaggtaa |
316 |
Q |
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| T |
6997851 |
atacacttgcacatattacaaatgtgccagaaattagtgagtcaactgtttcggcttatatgagtgtaaatgcaggtatattaaatatttattgaggtaa |
6997752 |
T |
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| Q |
317 |
ctgataagacatgtgcatggattaaaggaacaatcaaacaattctctgtttaccaaaacataagagaaattttcaaccatctctcaagttatgatgaaaa |
416 |
Q |
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| T |
6997751 |
ctgataagacatgtgcatggattaaaggaacaatcaaacaattctctgtttaccaaaacataagagaaattttcaaccatctctcaagttatgatgaaaa |
6997652 |
T |
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| Q |
417 |
accatcaactatcttcttaactctagactccaaagatttatttttaaagatgtaaagatatgatgctaaatatatcacatctctacaatctggaaaattt |
516 |
Q |
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| T |
6997651 |
accatcaactatcttcttaactctagactccaaagatttatttttaaagatgtaaagatatgatgctaaatatatcacatctctacaatctggaaaattt |
6997552 |
T |
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| Q |
517 |
cttaaggtagacatcacatagctaaagttgcacaggtcatgttagaaatttctttatggaacgtctttattttttgcgcatatcaacgttaattgagtgt |
616 |
Q |
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| T |
6997551 |
cttaaggtagacatcacatagctaaagttgcacaggtcatgttagaaatttctttatggaacgtctttattttttgcgcatatcaacgttaattgagtgt |
6997452 |
T |
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| Q |
617 |
aaggta |
622 |
Q |
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| T |
6997451 |
aaggta |
6997446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 6998049 - 6998014
Alignment:
| Q |
19 |
atttccatgatagcttcgttcttcgccatctggtat |
54 |
Q |
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| T |
6998049 |
atttccatgatagcttcgttcttcgccatctggtat |
6998014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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