View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_33 (Length: 396)
Name: NF19193_low_33
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Original strand, 5395479 - 5395858
Alignment:
| Q |
8 |
cgaagaatattgtctatgttcgatgaaagaaaatagtaacgatctaggcattgaacatgaatcaaattgaaaagtagtgaataaaaattacctgcataaa |
107 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5395479 |
cgaaaaatattgtctatgtttgatgaaagaaaatagtaacgatctaggcattaaacatgaatcaaattgaaaagtagtgaataaaaattacctgcataaa |
5395578 |
T |
|
| Q |
108 |
agtgtaacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgttgaata |
207 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5395579 |
agtgtaacgctgtctaccaatagattcattttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgttgaata |
5395678 |
T |
|
| Q |
208 |
ttcacagcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcg |
307 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5395679 |
ttcacagcccattcaaatctgttgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcg |
5395778 |
T |
|
| Q |
308 |
cctgcatattgcctctataattaacacgtcacaaaagagtcacgaattggaactgaaacgtacaaaacaaatacaagctc |
387 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| ||| |||||||| |
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| T |
5395779 |
cctgcatattgcctctataattaacaagtcacaaaagagtcacgaactggaactgaaacgaacaaatcaataacaagctc |
5395858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 5390739 - 5391049
Alignment:
| Q |
13 |
aatattgtctatgttcgatgaaagaaaatagtaacgatctaggcattgaacatgaatcaaattgaaaagtagtgaataaaaattacctgcataaaagtgt |
112 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390739 |
aatattgtctgtgtttgatgaaagaaaatagtaacgatctaggcattgaacatgaatcaaattgaaaagtagtgaataaaaattacctgcataaaagtgt |
5390838 |
T |
|
| Q |
113 |
aacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgttgaatattcac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390839 |
aacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagcatagctatcacgttgaatattcac |
5390938 |
T |
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| Q |
213 |
agcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcgcctgc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5390939 |
agcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcgcctgc |
5391038 |
T |
|
| Q |
313 |
atattgcctct |
323 |
Q |
| |
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|||||| |||| |
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| T |
5391039 |
atattgtctct |
5391049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 50829736 - 50829826
Alignment:
| Q |
223 |
aatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcgcctgcat |
314 |
Q |
| |
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||||| || ||||||| ||| | |||| ||| |||||||||||| ||||||||||||| ||||| |||| ||| ||||||| ||||||||| |
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| T |
50829736 |
aatctgttcatatcagaatggcaagtttcaatatatttagcttggagatgctcgagttaagaattgatgtaaaaactatcac-cgcctgcat |
50829826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 50846117 - 50846027
Alignment:
| Q |
223 |
aatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaatttatgttaaacctatcactcgcctgcat |
314 |
Q |
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||||| || ||||||| ||| | |||| ||| |||||||||||| ||||||||||||| ||||| |||| ||| ||||||| ||||||||| |
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| T |
50846117 |
aatctgttcatatcagaatggcaagtttcaatatatttagcttggagatgctcgagttaagaattgatgtaaaaactatcac-cgcctgcat |
50846027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 90 - 313
Target Start/End: Complemental strand, 26245700 - 26245477
Alignment:
| Q |
90 |
aaaaattacctgcataaaagtgtaacgctgtctaccaatagattcgttttgagcaatagaaaagtaagaaagtaaagggtaatggccaatatacgaagca |
189 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||| |
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| T |
26245700 |
aaaaattacctgcataaaagtgtaacgctgtctaccaatagattcgttttgagcgatagaaaagtaagaaagtaaaggataatggccaatgtatgaagca |
26245601 |
T |
|
| Q |
190 |
tagctatcacgttgaatattcacagcccattcaaatctattgatatcagcatgaccagttccaacatatttagcttgcagatgctcgagttgggaattta |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| ||||||| |
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| T |
26245600 |
tagctatcacgttgaatattcacagcccattcaaatctgttgatatcagcatgtccagttccaacgtatttagcttgaagatgttcaagttgcgaattta |
26245501 |
T |
|
| Q |
290 |
tgttaaacctatcactcgcctgca |
313 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
26245500 |
tgttaaacctatcactcgcctgca |
26245477 |
T |
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