View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_34 (Length: 392)
Name: NF19193_low_34
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 6757380 - 6757028
Alignment:
| Q |
5 |
tcatccaaagatcaaacaattctcagcattgagcatataatttcatcataacaaaatcattttgtgaatgctatagctgatgcacggtgggtca--aa-- |
100 |
Q |
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| T |
6757380 |
tcatccaaaaattaaacaattctcagcaacgagcatggaagtgcatcatattaaaatcattttgtgaatgttatagctgctgtaagttaattcagcaacg |
6757281 |
T |
|
| Q |
101 |
aggttggaggctggtcattt-atgacagaaccggttcgtcagta--ttcctacttgcaagctagagcatattcagctggccaaagctccgggtgcaagat |
197 |
Q |
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| T |
6757280 |
aggttggagactggtcattttatgacagaaccggttcg-caataattttctacttgcaagctagagcatattcagttagctgaagctccaggtgcatgat |
6757182 |
T |
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| Q |
198 |
ggttcctccaaactaatttgaatcttaacctgcaaactgtgaccatttcg-ttgatgcaatcagtggttaaatgtttgaataccaacctttgtgttgcta |
296 |
Q |
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| T |
6757181 |
ggttcctccaaactgctt-gaattttaacctgcaaattgtgaccatttcaattaatgcaatcagtggttatatgtttgaataccaacctttgtgttgctc |
6757083 |
T |
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| Q |
297 |
ctatttattctattatgttggaaggtaagttacttgt-ggaaaaaataggaagtg |
350 |
Q |
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| T |
6757082 |
ctattcataaaattatgttggactgtaagttacttgtgggaaaaaataggaagtg |
6757028 |
T |
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Back To:
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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 35111976 - 35112054
Alignment:
| Q |
1 |
attctcatccaaagatcaaacaattctcagcattgagcatataatttcatcataacaaaatcattttgtgaatgctata |
79 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
35111976 |
attctcatccaaagatcaaacaattctcagcaatgagcataaaattgcatcatatcaaaatcattttgtgaatgctata |
35112054 |
T |
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