View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_38 (Length: 388)
Name: NF19193_low_38
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 40283582 - 40283407
Alignment:
| Q |
16 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
115 |
Q |
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| T |
40283582 |
catcatcattcatacaatacctcaaagtccccaacaactcatcaaggcatagcaaaccaggacaagactaagtatatgaggcaattaaatacaagaccac |
40283483 |
T |
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| Q |
116 |
agcctttgtagcatcattcactcaccacaaaactaaacaagaatatgacatcaatcactttgccaaaaaaggagct |
191 |
Q |
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| T |
40283482 |
tgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacattaattacttcgccaaaaaaggagct |
40283407 |
T |
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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 40283406 - 40283350
Alignment:
| Q |
218 |
aacgattccctcttaacatttcagttctgcacttcaccatacaataggatcagcagt |
274 |
Q |
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| T |
40283406 |
aacgattccctcttaatgcttcagtcctgcacttcaccatacaatagaatcagcagt |
40283350 |
T |
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