View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_low_4 (Length: 631)
Name: NF19193_low_4
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 483; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 17 - 618
Target Start/End: Complemental strand, 2527611 - 2527005
Alignment:
| Q |
17 |
aaatgaaaggctctagtagtatgctttaacga----ttgcacaattgcgatccatnnnnnnngttctcttatgattacactagtaagataaaatatgaat |
112 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2527611 |
aaatgaaaggctctagtagtatgctataacgaacgattgcacaattgcgatccataaaaaaagttctcttatgattacactaataagataaaatatgaat |
2527512 |
T |
|
| Q |
113 |
ttgaaatatgaattacattggaacatgtatctaaataagtttctagacgtagcaaatttaaatataacatttaaaattgaagttttcgtatgtagaaaat |
212 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2527511 |
ttgaaatatgaattacattggaacgtgtatctaaataagtttctagacgtagcaaatttaaatataacatttaaaattgaagttttcgtacgtagaaaat |
2527412 |
T |
|
| Q |
213 |
ctaaatatcaatttttgtatgtgaaaaattcaaacatgacnnnnnnnnn---ctacaacagtttttgaacctaattaaaatccaaatatagcgtcttaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2527411 |
ctaaatatcaatttttgtatgtgaaaaattcaaacatgacaaaaaaaaaaaactacaacagtttttgaacctaattaaaatccaaatatagcgtcttaaa |
2527312 |
T |
|
| Q |
310 |
atagaagtttttcggatgcagaaattcaaatttaaaatttcttatttccaatatagagtcttaaatatagcatatgtagttttacaaccattatatataa |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2527311 |
atagaagtttttcggatgcagaaattcaaatttaaaatttcgtatttccaatatagcgtcttaaatatagcatatgtagttttacaaccattatatataa |
2527212 |
T |
|
| Q |
410 |
tagccatcgttttgaaaggatgctacgcttgaaatcctcctggctgaaacttttctagaacggtcaccttcttcactttgattctgcattcaagaaaact |
509 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2527211 |
tagccatcgttttgaaaggaagctacgcttgaaatcctcctggctgaaacttttctagaacggtcaccttcttcactttgattctgcattcaagaaaact |
2527112 |
T |
|
| Q |
510 |
gccaaccaccactcgatctcccccacttccactttgtgtgcagttaccacctctcaaaattcttgacatcttcccactagcgctaagcttccaacgatgc |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2527111 |
gccaaccaccactcgatctcccccacttccactttgtgtgcagttaccac--ctcaaaattattgacatcttcccactagcgctaagcttccaacgatgc |
2527014 |
T |
|
| Q |
610 |
tcacaggtt |
618 |
Q |
| |
|
|||| |||| |
|
|
| T |
2527013 |
tcaccggtt |
2527005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 286 - 345
Target Start/End: Complemental strand, 2577573 - 2577515
Alignment:
| Q |
286 |
aaaatccaaatatagcgtcttaaaatagaagtttttcggatgcagaaattcaaatttaaa |
345 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
2577573 |
aaaatccaaatacagcgtcttaaaatagaag-ttttcagatgcagaaattcaaatttaaa |
2577515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 2577645 - 2577601
Alignment:
| Q |
205 |
tagaaaatctaaatatcaatttttgtatgtgaaaaattcaaacat |
249 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
2577645 |
tagaaaatctatatatcaatatttgtatgtgaaaagttcaaacat |
2577601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University