View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_41 (Length: 369)

Name: NF19193_low_41
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_41
NF19193_low_41
[»] chr3 (15 HSPs)
chr3 (1-369)||(23497531-23497899)
chr3 (1-322)||(23433922-23434243)
chr3 (89-332)||(23445882-23446125)
chr3 (23-328)||(23477122-23477427)
chr3 (26-332)||(23350522-23350828)
chr3 (205-329)||(23462023-23462147)
chr3 (1-303)||(23382059-23382358)
chr3 (206-304)||(23467694-23467792)
chr3 (206-303)||(23400966-23401063)
chr3 (1-113)||(23438432-23438547)
chr3 (1-113)||(23403218-23403330)
chr3 (1-119)||(23470932-23471053)
chr3 (1-113)||(23461822-23461934)
chr3 (205-303)||(23471136-23471234)
chr3 (205-302)||(23403419-23403516)
[»] scaffold0201 (2 HSPs)
scaffold0201 (205-329)||(10195-10319)
scaffold0201 (1-118)||(9994-10111)
[»] chr8 (1 HSPs)
chr8 (23-99)||(15043190-15043266)
[»] chr4 (1 HSPs)
chr4 (253-305)||(12898191-12898243)


Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 23497531 - 23497899
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||  |||  |||||| |||||||||||||||||| | ||| |||    
T  23497531 ttcttcattgaaatcttgatgcatgaattgaaatgataggttgcaatcattacttccatgtttccgtctgttgtaaggatgccaacatatcaatacgtga 23497630  T
Q  101 tctgaaattaatgccccaatatactcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcaggaatttattgagaa 200  Q
    ||||||||||||| |||| |||| ||||||  || || || |||| | || ||||||||||||| |||| ||||||||||| |||||   | |||||||     
T  23497631 tctgaaattaatgtcccattatattcgtaaacaacaagaatacacttgtcgacttctttgccgtgttcaaagatgacacaatgcagggggtgattgagat 23497730  T
Q  201 catggaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatc 300  Q
    |||||||||||| |||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  23497731 catggaagcccttagaaagaatggtgcagaatacgaaaccagacaggttatattttggaatcggaggaatggttattgaagccttcattgtttgaaaatc 23497830  T
Q  301 aaacttgcgaggaacttgtgctcctggcaagacaaagacatcataataggaaacgttatcgacatcttt 369  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||  ||||| |||||||||    
T  23497831 aaacttgcgaggaacttgtgctcctggcaagaaatagacatcataataggaacggttattgacatcttt 23497899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 23433922 - 23434243
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||| |  || |||    
T  23433922 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcattacttccaagtttttgtctgttgtaaggatgccaacatatcaaaacgtga 23434021  T
Q  101 tctgaaattaatgccccaatatactcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcaggaatttattgagaa 200  Q
    |||||||||||||||||||||||  ||| || || || || |||||| |||||||||||||||| |||| |||| ||||||  ||||     |||| |||    
T  23434022 tctgaaattaatgccccaatataagcgtcatgaataacaaaacacctgtcaacttctttgccgtgttcaaagataacacaattcagggggagattgtgaa 23434121  T
Q  201 catggaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatc 300  Q
    ||||||||| ||  |||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23434122 catggaagcacttcgaaacaatggtgcagaatatgaaaccagacaggttagattttggaataggaggaatggttattgaagcctttgttgtttgaaaatc 23434221  T
Q  301 aaacttgcgaggaacttgtgct 322  Q
    |||||||||||||| |||||||    
T  23434222 aaacttgcgaggaatttgtgct 23434243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 89 - 332
Target Start/End: Original strand, 23445882 - 23446125
Alignment:
Q  89 attactacatgatctgaaattaatgccccaatatactcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcagga 188  Q
    |||| |||||||||||||||||||| ||||||||| | | ||  |||| ||| |||| ||||||||||||||||||||||| ||||||||||| |||||     
T  23445882 attaatacatgatctgaaattaatgtcccaatataattgcaagcaaaagtaaaacacgtttcaacttctttgccgttttcaaagatgacacaatgcaggg 23445981  T
Q  189 atttattgagaacatggaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttat 288  Q
      | ||||  || ||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23445982 ggtgattgcaaatatggaagcccttagaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagcctttat 23446081  T
Q  289 tgtttgaaaatcaaacttgcgaggaacttgtgctcctggcaaga 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23446082 tgtttgaaaatcaaacttgcgaggaacttgtgctcctggcaaga 23446125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 23 - 328
Target Start/End: Original strand, 23477122 - 23477427
Alignment:
Q  23 atgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatgatctgaaattaatgccccaatat 122  Q
    ||||||||||||||||| || ||||||| ||| |||| ||||| ||| | ||||  || ||||||||  | |||||||||||||||||||  | ||||||    
T  23477122 atgaattgaaatgatagtttacaatcattacttccaaatttttctcttttgtaacaataccaacataacaatacatgatctgaaattaatctcacaatat 23477221  T
Q  123 actcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcaggaatttattgagaacatggaagccctcagaaagaat 222  Q
    |   |  |  | |||||| |||||| || ||||||||||||| |||  |||||| |||| |||||   | | |  ||| | |||||||||||||||||||    
T  23477222 aaagggcaaaacaaataatacacctgtcgacttctttgccgtgttctaagatgatacaatgcagggggtgactctgaaaaaggaagccctcagaaagaat 23477321  T
Q  223 gatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaacttgcgaggaacttgtgct 322  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  23477322 ggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaacttgcaaggaacttgtgct 23477421  T
Q  323 cctggc 328  Q
    ||||||    
T  23477422 cctggc 23477427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 332
Target Start/End: Original strand, 23350522 - 23350828
Alignment:
Q  26 aattgaaatgataggttgcaa---tcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatgatctgaaattaatgccccaatat 122  Q
    |||||||||||||||||||||   |||| ||| ||| ||| |||  ||  |||| ||||||||||||| | ||| |||||| ||||||||||||||| ||    
T  23350522 aattgaaatgataggttgcaaaagtcataacttccactttcttgaatgctgtaacgatgccaacatatcaatacgtgatctaaaattaatgccccaagat 23350621  T
Q  123 actcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcaggaatttattgagaacatggaagccctcagaaagaat 222  Q
    | | | || |||   || |||| || || ||||||||||| | |||| |||| |||||| | ||| | |  | |  ||||  ||| ||||| || ||||     
T  23350622 aattgcaactaa---tacgacatctgtcgacttctttgccatgttcaaagataacacaatgaagggaatgttcgtaaacactgaaaccctctgatagaac 23350718  T
Q  223 gatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaacttgcgaggaacttgtgct 322  Q
    ||||||||||||||||||||||| || | |||||||||| ||||||||  |||||||||||| || ||| | ||||||||| ||||  |||||||||||     
T  23350719 gatgcagaatatgaaaccacacaagtaagattttggaattggaggaatacttattgaagcctctactgtcttaaaatcaaagttgcatggaacttgtgca 23350818  T
Q  323 cctggcaaga 332  Q
    ||||||||||    
T  23350819 cctggcaaga 23350828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 23462023 - 23462147
Alignment:
Q  205 gaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaac 304  Q
    |||||||||||||| || |||||| |||||||||||||||| || | |||| | ||||||| |||| |||||||||||||| ||||| |||||||||||     
T  23462023 gaagccctcagaaaaaaggatgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatagttattgaagccttgattgtctgaaaatcaaaa 23462122  T
Q  305 ttgcgaggaacttgtgctcctggca 329  Q
    ||    |||| ||||||||||||||    
T  23462123 tttaatggaatttgtgctcctggca 23462147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 23382059 - 23382358
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    |||||||||| || ||||| | |||||||||||||||| ||| ||||||| ||| ||| ||| |||| ||| ||||  |||||| ||||| | |||||||    
T  23382059 ttcttcattgggaccttgaagtatgaattgaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaccatatcaatacatga 23382158  T
Q  101 tctgaaattaatgccccaatatactcgtaattaaaaataagacacctttcaacttctttgccgttttcatagatgacacaacgcaggaatttattgagaa 200  Q
    ||||||||||||| ||| | ||| | |  | |||   |  |||  || || |||||||| |||  |||| |||| | |||| | ||||  |  |||  ||    
T  23382159 tctgaaattaatgtcccgagataattgagactaa---tgcgacgtctgtcgacttcttttccgcattcaaagataatacaatgaaggacatggttgttaa 23382255  T
Q  201 catggaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatc 300  Q
    ||  |||||||||||||| || |||||| |||||||||||||||| || | |||| | ||||||| ||||  ||||||||||||| ||||| ||||||||    
T  23382256 cagtgaagccctcagaaaaaaggatgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatacttattgaagccttgattgtctgaaaatc 23382355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 206 - 304
Target Start/End: Original strand, 23467694 - 23467792
Alignment:
Q  206 aagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaac 304  Q
    ||||||||||||||||||||| | ||||| ||||  ||||  | | |||||||||||||||||||  |||||||||||| |||||| ||||||||||||    
T  23467694 aagccctcagaaagaatgatggaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 23467792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 206 - 303
Target Start/End: Original strand, 23400966 - 23401063
Alignment:
Q  206 aagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaa 303  Q
    ||||||||||||||||||||||| ||||| ||||  |||   | | |||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  23400966 aagccctcagaaagaatgatgcaaaatataaaactgcaccaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaa 23401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23438432 - 23438547
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgca---atcatcactcccaattttttgtctgtagtaaggatgccaacatattactaca 97  Q
    |||||||||| |||||||||| |||||||||||||||| |||| |   ||||| ||| ||| ||| |||||||| ||||  |||||| ||||| | ||||    
T  23438432 ttcttcattgggatcttgatgtatgaattgaaatgataagttgtaaatatcattacttccattttcttgtctgttgtaaccatgccagcatatcaataca 23438531  T
Q  98 tgatctgaaattaatg 113  Q
    ||||||||||||||||    
T  23438532 tgatctgaaattaatg 23438547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23403218 - 23403330
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    |||||||||| || ||||| | |||||||||||||||| ||| ||||||| ||| ||| ||| |||| ||| ||||  ||||||||| || | |||||||    
T  23403218 ttcttcattgggaccttgaagtatgaattgaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaacacatcaatacatga 23403317  T
Q  101 tctgaaattaatg 113  Q
    |||||||||||||    
T  23403318 tctgaaattaatg 23403330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23470932 - 23471053
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaa---tcatcactcccaattttttgtctgtagtaaggatgccaacatattactaca 97  Q
    |||||||||| || ||||| | |||||||||||||||| |||||||   |||| ||| ||| ||| |||||||| ||||  |||||||||||| | | ||    
T  23470932 ttcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttcttgtctgttgtaaccatgccaacatatcaatgca 23471031  T
Q  98 tgatctgaaattaatgccccaa 119  Q
    |||||||||||||||| |||||    
T  23471032 tgatctgaaattaatgtcccaa 23471053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23461822 - 23461934
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    |||||||||| || ||||| | ||||||| |||||||| ||| ||||||| ||| ||| ||| |||| ||| ||||  ||||||||  || | |||||||    
T  23461822 ttcttcattgggaccttgaagtatgaatttaaatgataagttacaatcataacttccactttcttgtatgttgtaaccatgccaacgcatcaatacatga 23461921  T
Q  101 tctgaaattaatg 113  Q
    |||||||||||||    
T  23461922 tctgaaattaatg 23461934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 303
Target Start/End: Original strand, 23471136 - 23471234
Alignment:
Q  205 gaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaa 303  Q
    |||||||||||||| || |||||  |||||||||||||| | |  | |||||  ||||||| |||| |||||||||||||  ||||| |||||||||||    
T  23471136 gaagccctcagaaaaaaggatgcgaaatatgaaaccacataagacagattttttaataggaagaatagttattgaagcctcgattgtctgaaaatcaaa 23471234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 302
Target Start/End: Original strand, 23403419 - 23403516
Alignment:
Q  205 gaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaa 302  Q
    |||||||||||||| || |||||| ||||||||||||| || |  | |||| | ||||||| |||| |||||||||||||  ||||| || |||||||    
T  23403419 gaagccctcagaaaaaaggatgcaaaatatgaaaccacgcaagacagatttagtaataggaagaatagttattgaagcctcgattgtctgcaaatcaa 23403516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 10195 - 10319
Alignment:
Q  205 gaagccctcagaaagaatgatgcagaatatgaaaccacacaggttatattttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaac 304  Q
    |||||||||||||||||||||||| |||||||||||||||| || | |||||| ||||||| |||| | ||||||||||   ||||| |||||||||||     
T  10195 gaagccctcagaaagaatgatgcaaaatatgaaaccacacaagtcagattttgtaataggaagaatagatattgaagccccgattgtctgaaaatcaaaa 10294  T
Q  305 ttgcgaggaacttgtgctcctggca 329  Q
    |     |||||||||||||||||||    
T  10295 tataatggaacttgtgctcctggca 10319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9994 - 10111
Alignment:
Q  1 ttcttcattgagatcttgatgcatgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatga 100  Q
    |||||||||| || ||||| | ||||||| |||||||| ||| ||||||| ||| ||| ||| |||||| | ||||  |||||| ||||| | |||||||    
T  9994 ttcttcattgggaccttgaagtatgaatttaaatgataagttacaatcataacttccattttcttgtctattgtaaccatgccagcatatcaatacatga 10093  T
Q  101 tctgaaattaatgcccca 118  Q
    ||||||||||||| ||||    
T  10094 tctgaaattaatgtccca 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 15043190 - 15043266
Alignment:
Q  23 atgaattgaaatgataggttgcaatcatcactcccaattttttgtctgtagtaaggatgccaacatattactacatg 99  Q
    |||||||||||||||| ||||||||||| ||||||| | | |||| ||| |||| ||||||||||||| ||||||||    
T  15043190 atgaattgaaatgataagttgcaatcattactcccactctcttgtatgttgtaacgatgccaacatatcactacatg 15043266  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 12898243 - 12898191
Alignment:
Q  253 ttttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaact 305  Q
    ||||||||||||||||||   |||||| |||| ||||||||||||||||||||    
T  12898243 ttttggaataggaggaataactattgacgcctctattgtttgaaaatcaaact 12898191  T

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