View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_42 (Length: 368)
Name: NF19193_low_42
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_42 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4163524 - 4163891
Alignment:
| Q |
1 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163524 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
4163623 |
T |
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| Q |
101 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163624 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
4163723 |
T |
|
| Q |
201 |
gtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163724 |
gtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
4163823 |
T |
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| Q |
301 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
368 |
Q |
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| T |
4163824 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
4163891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4123821 - 4124182
Alignment:
| Q |
1 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
4123821 |
cattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaaga |
4123920 |
T |
|
| Q |
101 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
200 |
Q |
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||||||||| |||||||||||||||||||| ||||| ||||| || ||| ||| |||| |||||||||||| ||||||||||| ||||| |||||||| |
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| T |
4123921 |
aggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgt |
4124020 |
T |
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| Q |
201 |
gtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
300 |
Q |
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| T |
4124021 |
gtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa----ga--tg |
4124114 |
T |
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| Q |
301 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
368 |
Q |
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||||| |||||||||| || || ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4124115 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtga |
4124182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4134366 - 4134727
Alignment:
| Q |
1 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | |||||| |||||||||||| ||||||||||||||| ||| | || ||||||| ||||| |
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| T |
4134366 |
cattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaaga |
4134465 |
T |
|
| Q |
101 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
200 |
Q |
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| T |
4134466 |
aggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaacagctgaatctgcagggtgt |
4134565 |
T |
|
| Q |
201 |
gtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
300 |
Q |
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|||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || || |
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| T |
4134566 |
gtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tg |
4134659 |
T |
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| Q |
301 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
368 |
Q |
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||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
4134660 |
aaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtga |
4134727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4145168 - 4145529
Alignment:
| Q |
1 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| | ||||| | |||||| |||||||||||| ||||||||||||||| ||| | || ||||||| ||||| |
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| T |
4145168 |
cattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacactaattgtaaaatgtcccgaaga |
4145267 |
T |
|
| Q |
101 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
200 |
Q |
| |
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||||||||| ||||||||||||| |||||||| || | ||| || || |||| |||||||||||| |||||| ||||||||| | ||| | |||||| |
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| T |
4145268 |
aggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaacagctgaatctgaagggtgt |
4145367 |
T |
|
| Q |
201 |
gtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
300 |
Q |
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|||||||||||||| ||||||| ||||||||||||||| |||||||||||||| ||| ||||| |||||| |||||| |||||| ||||| || || |
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| T |
4145368 |
gtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaa----ga--tg |
4145461 |
T |
|
| Q |
301 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
368 |
Q |
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||||| ||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4145462 |
aaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtga |
4145529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4153171 - 4153532
Alignment:
| Q |
1 |
cattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaaga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||| | |||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
4153171 |
cattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaaga |
4153270 |
T |
|
| Q |
101 |
aggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtga |
200 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| ||||| || ||| ||| |||| |||||||||||| ||||||||||| ||||| |||||||| |
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| T |
4153271 |
aggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaacagctgcatctgcagggtgt |
4153370 |
T |
|
| Q |
201 |
gtgaaactatcccaaattgttgatccagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaatttattgaatttggacttg |
300 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||| |||| || || | ||||||||||||| |||| ||||||||||||| |||||| ||||| || || |
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| T |
4153371 |
gtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaa----ga--tg |
4153464 |
T |
|
| Q |
301 |
aaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtga |
368 |
Q |
| |
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||||| |||||||||| || || ||||||| |||||||||||||| || |||||||| ||||||| |
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| T |
4153465 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtga |
4153532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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