View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_low_43 (Length: 368)
Name: NF19193_low_43
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 50505126 - 50505475
Alignment:
| Q |
1 |
acactacttgctgagaacgtaactggtagtcattttggtacgtgcacattcaatacataaagcatgcaactctcaatgtaacaattcatgctccaaccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50505126 |
acactacttgctgagaacgtaactggtagtcattttggtacatgcacattcaatacataaagcatgcaactctcaaagtaacaattcatgctccaaccgt |
50505225 |
T |
|
| Q |
101 |
ggaagctggagaacgagaaaaattagtcaaaaccatgcatataaaaaccaaagatctggtacaaaggttatccattcaaatcaggttttccccgttcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
50505226 |
ggaagctggagaacgagaaaaattagtcaaaaccatgcatataaaaaccaaagatctggtacaaaggttaaccattcaaatcaggttttccccgt---tc |
50505322 |
T |
|
| Q |
201 |
atcaactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcatatttaattgtgaacatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50505323 |
atcaactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacattccaaataggacgagctcatatttaattgtgaacatc |
50505422 |
T |
|
| Q |
301 |
ttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaa |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50505423 |
ttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaa |
50505475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 55281032 - 55280971
Alignment:
| Q |
128 |
caaaaccatgcatataaaaaccaaagatctggtacaaaggttatccattcaaatcaggtttt |
189 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55281032 |
caaaaccataaatataaaaagcaaagatctggtacaaaggttatccattcaaatcaggtttt |
55280971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 55280877 - 55280827
Alignment:
| Q |
287 |
taattgtgaacatcttatataggtataggcttgatcttgaagtgaagtgaaataaga |
343 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55280877 |
taattgggaacatcttatatagg------cttgatcttgaagtgaagtgaaataaga |
55280827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 204 - 353
Target Start/End: Complemental strand, 28733906 - 28733757
Alignment:
| Q |
204 |
aactaattcagatgtcgaacttctttagcaaaaagggaaagttgttgaaaatgttcacactccaaataggacgagctcatatttaattgtgaacatctta |
303 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||| | ||||||| |||||| |||| || ||||||||| |
|
|
| T |
28733906 |
aactaattcagatgtcaaacttctttagcaaaaaggaaaagttgttgaaaatgttcacattcccagcaggacgaactcataattaacagtaaacatctta |
28733807 |
T |
|
| Q |
304 |
tataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaa |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28733806 |
tataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaa |
28733757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University