View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_49 (Length: 345)
Name: NF19193_low_49
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_49 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 28800888 - 28801040
Alignment:
| Q |
56 |
ttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatattaaagttctttcgtggtattgg |
155 |
Q |
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| T |
28800888 |
ttgggttatttggaagagacggaatgaggttatcttttataatggtgtggttgaggtagaggatttggtggagaatatcaaggttctagcttggtattgg |
28800987 |
T |
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| Q |
156 |
agtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaa |
208 |
Q |
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| T |
28800988 |
agtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaa |
28801040 |
T |
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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 21019035 - 21019166
Alignment:
| Q |
33 |
cggttgatttggaatgcttcaacttgggctatat-ggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaat |
131 |
Q |
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| T |
21019035 |
cggttgatttggaatgcgacggtttgggctattttggaagagaaggaatgatattgtgttcaata-tggtgttgtcgacttagatgatttggtggaaaat |
21019133 |
T |
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| Q |
132 |
attaaagttctttcgtggtattggagtatgagt |
164 |
Q |
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| T |
21019134 |
attaaagttctatcatggtattggagtttgagt |
21019166 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 2516850 - 2516808
Alignment:
| Q |
12 |
aagaagactaagaatggttttcggttgatttggaatgcttcaa |
54 |
Q |
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| T |
2516850 |
aagaagactaaaaatggttttcggttgatttggaatgcttcaa |
2516808 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 13854432 - 13854474
Alignment:
| Q |
107 |
cgaggtagatgatttggtggagaatattaaagttctttcgtgg |
149 |
Q |
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| T |
13854432 |
cgaggtagatgatttggtggagaagattaaagttttgtcgtgg |
13854474 |
T |
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Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 2999 - 2926
Alignment:
| Q |
147 |
tggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatg |
220 |
Q |
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| T |
2999 |
tggttttggagtatgagtcggttgaaaattgcatcgtgtttgttttacaagtagtgttggaacccacaggaatg |
2926 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 209
Target Start/End: Original strand, 7859323 - 7859420
Alignment:
| Q |
112 |
tagatgatttggtggagaatattaaagttctttcgtggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaat |
209 |
Q |
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| T |
7859323 |
tagaggatttggtggagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaat |
7859420 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 224
Target Start/End: Original strand, 4282174 - 4282363
Alignment:
| Q |
36 |
ttgatttggaatgcttcaacttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatatta |
135 |
Q |
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| T |
4282174 |
ttgatttggcttgcttctatttgggttatttggaagagaagaaatgaggttatctttaataatggtgttgtagagatggaggatgtggtcgagaatataa |
4282273 |
T |
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| Q |
136 |
aagttctttcgtggtattggagtatgagt-tgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatgttta |
224 |
Q |
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| T |
4282274 |
aggttctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgttta |
4282363 |
T |
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