View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_5 (Length: 605)
Name: NF19193_low_5
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_5 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 12 - 570
Target Start/End: Complemental strand, 40766183 - 40765625
Alignment:
| Q |
12 |
tcatcactagttaaagtattttatcattgtttttctttgtgtacatttaatatcctccgtatgcaccgtccaagggatgaattcttcaaatgcaacatat |
111 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40766183 |
tcatcactggttaaagtattttatcattgtttttctttgtgtacatttaatatcctccgtatgcaccgtccgagggatgaattcttcaaatgcaacatat |
40766084 |
T |
|
| Q |
112 |
ttaagcttgggttcgaataatcaatcttagttaagttagaatgagttcgaattcctccatttatccatcatctatttattttccatttacgcaagagata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40766083 |
ttaagcttgggttcgaataatcaatcttagttaagttagaatgagttcaaattcctccatttatccatcatatatttattttccatttacgcaagagata |
40765984 |
T |
|
| Q |
212 |
tacacatgtgaaagattcatgagatccataagtaaaatccacttattaaaataggttccactaatcttcacttgtgtccatctctcgcgtaaatgaacaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40765983 |
tacacatgtgaaagattcatgagatccataagtaaaatccacttattaaaataggttccactaatcttcacttgtgtccatctcgcgcgtaaatgaacaa |
40765884 |
T |
|
| Q |
312 |
taaataataatagataaatggaggaatccaaattcacttaaaagagactcgttttatataatctaagcgcttttgatgatatttaatcattttcaaagat |
411 |
Q |
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| T |
40765883 |
taaataaaaatagataaatggaggaatccaaattcacttaaaagagactcgttttatataatctaagcgcttttgatgatatttaatcattttcaaagat |
40765784 |
T |
|
| Q |
412 |
tcaccattactaaaagtgatatgaattgttcacaagtcttaactcaactaataaaaatgtcaaaattgtgagatcgaacgcgttgaccggggttcgaatg |
511 |
Q |
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| T |
40765783 |
tcaccattactaaaagtgatatgaattattcacaagtcttaactcaactaataaaaatgtcgaaattgtgagatcgaacgcgttgaccggggttcgaacg |
40765684 |
T |
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| Q |
512 |
ccaaaccttccacttgtgggtgcgagtttcaataattatttatcattttgtccatctac |
570 |
Q |
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|| || |||||||||||||||||||||||| || |||||||| |||||||||||||||| |
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| T |
40765683 |
ccgaatcttccacttgtgggtgcgagtttcgatgattatttaccattttgtccatctac |
40765625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 23746135 - 23746086
Alignment:
| Q |
249 |
tccacttattaaaataggttccactaatct-tcacttgtgtccatctctc |
297 |
Q |
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| T |
23746135 |
tccacttattaaaatgggtcccactaatctatcacttgtgtctatctctc |
23746086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 8407646 - 8407578
Alignment:
| Q |
248 |
atccacttattaaaataggttccactaatcttcacttgtgtccatctctcgcgtaaatgaacaataaat |
316 |
Q |
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| T |
8407646 |
atccacttattaaaattggtcccactaatctccacatgtgtacatctctctcataaatggacaataaat |
8407578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 10600360 - 10600305
Alignment:
| Q |
451 |
taactcaactaataaaaatgtcaaaattgtgagatcgaacgcgttgaccggggttc |
506 |
Q |
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| T |
10600360 |
taactcaactaataaaaatgtcaaaattgttaggccaaacgctgtgaccggggttc |
10600305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 479
Target Start/End: Original strand, 22087 - 22121
Alignment:
| Q |
445 |
aagtcttaactcaactaataaaaatgtcaaaattg |
479 |
Q |
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| T |
22087 |
aagtcttaactcaactaataaaaatgtcaaaattg |
22121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 478
Target Start/End: Original strand, 1648177 - 1648213
Alignment:
| Q |
442 |
cacaagtcttaactcaactaataaaaatgtcaaaatt |
478 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
1648177 |
cacaagtcttaactcaactagcaaaaatgtcaaaatt |
1648213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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