View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_50 (Length: 341)
Name: NF19193_low_50
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 2581576 - 2581900
Alignment:
| Q |
9 |
gaagaatattatgagaaaaattatgcgatgacttgtttaggatagggtttggacttctgaaaa--tgacttggatttgatcatatgcttatgatcatcca |
106 |
Q |
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| T |
2581576 |
gaagaatattatgagaaaaattatgcgatgacttgtttaggatagggtttggacttctgaaaaaatgacttggatttgatcatatgcttatgatcatcca |
2581675 |
T |
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| Q |
107 |
tatccaataatcctttgtaaatggataattatattcaaccaaagaccaaggtcctagatatggtagggaatatgtcttaaattcaagaagactttttgta |
206 |
Q |
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| T |
2581676 |
tatccaataatcctttgtaaatggataattatattcaaccaaagaccaaggtcctagatatggtagggaatatgtcttaaattcaagaagactttttgta |
2581775 |
T |
|
| Q |
207 |
aaggaaaattcagtacttgaaaaagtcaagaaaatagtgggagtttcatgtgcacatcctcgagc-------tacaactgcttccagctttgttacgaag |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2581776 |
aaggaaaattcagtacttgaaaaagtcaagaaaatagtgggagtttcatgtgcacatcctcgagctacaatttacaactgcttccagctttgttacgaag |
2581875 |
T |
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| Q |
300 |
ttttcaacgataacgccattaagtg |
324 |
Q |
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| T |
2581876 |
ttttcaacgataaggccattaagtg |
2581900 |
T |
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