View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_51 (Length: 333)

Name: NF19193_low_51
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_51
NF19193_low_51
[»] chr7 (3 HSPs)
chr7 (20-328)||(27272866-27273178)
chr7 (34-73)||(9332985-9333024)
chr7 (218-267)||(27282622-27282671)
[»] chr3 (4 HSPs)
chr3 (116-218)||(6077828-6077932)
chr3 (20-85)||(6077731-6077796)
chr3 (34-73)||(22157926-22157965)
chr3 (121-178)||(9765844-9765900)
[»] chr6 (1 HSPs)
chr6 (20-153)||(13550309-13550435)
[»] chr8 (1 HSPs)
chr8 (33-214)||(43651575-43651750)
[»] chr5 (1 HSPs)
chr5 (33-214)||(21114784-21114959)
[»] chr4 (2 HSPs)
chr4 (35-83)||(7807628-7807676)
chr4 (103-218)||(39482402-39482516)
[»] chr2 (1 HSPs)
chr2 (115-214)||(24863595-24863692)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 27273178 - 27272866
Alignment:
Q  20 tctttctattttacaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnn-----ccaatgaaaatgggagtat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||    
T  27273178 tctttctattttacaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacaaaaaaaaaaaaaccaatgaaaatgggagtat 27273079  T
Q  115 ggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 214  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  27273078 ggacgttccaaattacaattgcaagagacgtttcatccacagataaagacgaaaacatgacagggtttcatcaagtttctatctttcttatcccttttat 27272979  T
Q  215 catctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaattnnnnnnnnntttgctggtccattataatgtaacccgacccccttttg 314  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||           || |||||||||||||||||||||||||||||||||    
T  27272978 catctctcaaaggaataatgaaaatgcttgagaaaatcaaacaaggcacaattaaaaaaaaa-atgttggtccattataatgtaacccgacccccttttg 27272880  T
Q  315 atcttcttctcact 328  Q
    ||||||||| ||||    
T  27272879 atcttcttcccact 27272866  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 9333024 - 9332985
Alignment:
Q  34 aattgctaatgagaattgaggattgagcggctctattgtt 73  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  9333024 aattgctaatgagaattgaggaatgagcggttctattgtt 9332985  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 27282671 - 27282622
Alignment:
Q  218 ctctcaaagaaataatgaaaatgtttgagaaaatcaaacaaggcacaatt 267  Q
    ||||||||| ||||||||||||||| ||||||  ||||||||| ||||||    
T  27282671 ctctcaaaggaataatgaaaatgttagagaaacccaaacaaggtacaatt 27282622  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 6077828 - 6077932
Alignment:
Q  116 gacgttccaaattacaattgcaagag--acgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatccctttta 213  Q
    ||||||||||||||||||||||||||  |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||    
T  6077828 gacgttccaaattacaattgcaagagagacgtttcatccaaagataaagaggaaagcatgacagggtttcaccaagtttctatatttcttttccctttta 6077927  T
Q  214 tcatc 218  Q
    |||||    
T  6077928 tcatc 6077932  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 6077731 - 6077796
Alignment:
Q  20 tctttctattttacaattgctaatgagaattgaggattgagcggctctattgtttttcttctcagg 85  Q
    ||||||||||| |||||||| ||||||||||||||||||| | | |||||||||||||||||||||    
T  6077731 tctttctatttgacaattgcaaatgagaattgaggattgaccagttctattgtttttcttctcagg 6077796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 22157965 - 22157926
Alignment:
Q  34 aattgctaatgagaattgaggattgagcggctctattgtt 73  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  22157965 aattgctaatgagaattgaggaatgagcggttctattgtt 22157926  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 9765844 - 9765900
Alignment:
Q  121 tccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagg 178  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||| |||| |||||||||    
T  9765844 tccaaattacaattgcaagagacatttcatccaaagatagagaggaaa-catgacagg 9765900  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 13550435 - 13550309
Alignment:
Q  20 tctttctattttacaattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacg 119  Q
    ||||||||||  | ||||||||||||||||||||||||||| || |||||||||||      ||||||        |||||||||||||||| | |||||    
T  13550435 tctttctattggaaaattgctaatgagaattgaggattgaggggttctattgtttt------caggacaaaaaaa-ccaatgaaaatgggagcagggacg 13550343  T
Q  120 ttccaaattacaattgcaagagacgtttcatcca 153  Q
    ||||||||||||||| ||||||||||||||||||    
T  13550342 ttccaaattacaattacaagagacgtttcatcca 13550309  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 43651750 - 43651575
Alignment:
Q  33 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaa 132  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||         ||| ||||||||||| | |||||| |||||||||||    
T  43651750 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaat--caa-gaaaatgggagcagggacgt-ccaaattacaa 43651655  T
Q  133 ttgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 214  Q
    ||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  43651654 ttgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 43651575  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 214
Target Start/End: Complemental strand, 21114959 - 21114784
Alignment:
Q  33 caattgctaatgagaattgaggattgagcggctctattgtttttcttctcaggacnnnnnnnnccaatgaaaatgggagtatggacgttccaaattacaa 132  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||| ||| |||         ||| ||||||||||| | |||||| |||||||||||    
T  21114959 caattgctaatgagaattgaggattgaacagttctattgtttttcttttcaagacaaagaat--caa-gaaaatgggagcagggacgt-ccaaattacaa 21114864  T
Q  133 ttgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 214  Q
    ||||||||||| ||||||||| | ||| ||| |||| ||||||| ||||||||| |   ||||| ||||||||| |||||||    
T  21114863 ttgcaagagacatttcatccaaagatagagaggaaa-catgaca-ggtttcaccgaagatctatatttcttatctcttttat 21114784  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 7807676 - 7807628
Alignment:
Q  35 attgctaatgagaattgaggattgagcggctctattgtttttcttctca 83  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  7807676 attgctaataagaattgaggattgagcggtactattgtttttcttctca 7807628  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 39482516 - 39482402
Alignment:
Q  103 aaatgggagtatggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttct 202  Q
    ||||||||| | ||||||||||||||||||||| ||||||| ||||||| | |  || | | | || ||||||||||||| ||||| | || || ||| |    
T  39482516 aaatgggagcagggacgttccaaattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttat 39482418  T
Q  203 tatcccttttatcatc 218  Q
    |||| |||||||||||    
T  39482417 tatctcttttatcatc 39482402  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 24863692 - 24863595
Alignment:
Q  115 ggacgttccaaattacaattgcaagagacgtttcatccacaaataaagacgaaagcatgacagggtttcaccaagtttctatctttcttatcccttttat 214  Q
    |||||| |||||| ||||||||||||||| ||| ||||| | ||| ||| |||| ||||||| |||||||||||   ||||| ||||||||| |||||||    
T  24863692 ggacgtcccaaataacaattgcaagagacatttaatccaaagatagagaggaaa-catgaca-ggtttcaccaaagatctatatttcttatctcttttat 24863595  T

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