View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_52 (Length: 333)

Name: NF19193_low_52
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_52
NF19193_low_52
[»] scaffold0067 (1 HSPs)
scaffold0067 (9-148)||(7972-8111)
[»] chr7 (3 HSPs)
chr7 (9-148)||(41455364-41455503)
chr7 (9-139)||(41451689-41451820)
chr7 (9-139)||(32355239-32355369)
[»] chr8 (3 HSPs)
chr8 (9-139)||(38640645-38640775)
chr8 (9-148)||(43658909-43659048)
chr8 (52-139)||(43654318-43654405)
[»] chr4 (6 HSPs)
chr4 (8-148)||(6799125-6799265)
chr4 (11-148)||(8996067-8996206)
chr4 (11-138)||(8986604-8986733)
chr4 (19-139)||(42528324-42528436)
chr4 (65-120)||(6806927-6806981)
chr4 (20-139)||(55480736-55480858)
[»] chr3 (5 HSPs)
chr3 (9-148)||(28703665-28703804)
chr3 (75-148)||(32893715-32893788)
chr3 (29-137)||(36611959-36612068)
chr3 (9-64)||(32893791-32893846)
chr3 (14-92)||(8878851-8878929)
[»] chr2 (6 HSPs)
chr2 (8-130)||(8363300-8363422)
chr2 (216-291)||(673109-673184)
chr2 (60-139)||(8365589-8365668)
chr2 (9-139)||(27529086-27529216)
chr2 (9-68)||(33357996-33358055)
chr2 (14-126)||(40862774-40862886)
[»] chr1 (3 HSPs)
chr1 (9-139)||(13016351-13016481)
chr1 (9-139)||(47323268-47323395)
chr1 (35-139)||(47326868-47326972)
[»] chr6 (2 HSPs)
chr6 (16-139)||(27074981-27075106)
chr6 (18-139)||(27078346-27078469)
[»] chr5 (3 HSPs)
chr5 (16-139)||(26050014-26050139)
chr5 (9-139)||(40254861-40254988)
chr5 (16-139)||(26053428-26053553)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-92)||(206191-206264)


Alignment Details
Target: scaffold0067 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 7972 - 8111
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  7972 gagatgaacctgttgtactctgggggagttgcgcaattttgcggataattccttagttcagtgacatagtcacacctcaggttttactttttattttctt 8071  T
Q  109 gttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  8072 gttttgcaggttatgatccttccgtcatccgcagtcaaca 8111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 41455503 - 41455364
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  41455503 gagatgaacctgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcctcagattttactttttattttctt 41455404  T
Q  109 gttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    |||||| ||||||||||||||| |||||||| || |||||    
T  41455403 gttttgtaggttatgatccttcagtcatccgcagtcaaca 41455364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 41451820 - 41451689
Alignment:
Q  9 gagatgaacctgttgtactctggggg-agttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttct 107  Q
    |||||||||||||||||||||||||| |||||  ||||||||| ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||    
T  41451820 gagatgaacctgttgtactctggggggagttgcacaattctgcggataattccttagtttagtgacatagtcacgcctcatgttttactttttattttct 41451721  T
Q  108 tgttttgcaggttatgatccttccgtcatccg 139  Q
    ||||||||||||||||||||||| ||||||||    
T  41451720 tgttttgcaggttatgatccttcagtcatccg 41451689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 32355239 - 32355369
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||||||||||||||| | ||||| | ||||||||  |||||| |||||||||||||  | ||||||||||||||||||||||||||||||||    
T  32355239 gagatgaacctgttgtactctggagaagttgcgtaattctgcgaataatttcttagttcagtgatattgtcacgcctcaggttttactttttattttctt 32355338  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
    |||||||||||||||||||||| ||||||||    
T  32355339 gttttgcaggttatgatccttcagtcatccg 32355369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 38640775 - 38640645
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||    
T  38640775 gagatgaacctgttgtactctgggggagttgcacaattctgcggataattccttagttcagtgacatagtcacgcctcaggttttacgttttattttatt 38640676  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
     ||||||||||| ||||||||| ||||||||    
T  38640675 attttgcaggttgtgatccttcagtcatccg 38640645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 43658909 - 43659048
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    |||| ||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||| | |||| ||||||| |||||| ||| ||||||||    
T  43658909 gagaagaaccggttgtactctgggggagttgcgcaattctgcggataattccttagtttagtgacattgtcatgcctcagattttacgtttcattttctt 43659008  T
Q  109 gttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    |||||||||||| ||||||||| || ||||| | ||||||    
T  43659009 gttttgcaggttgtgatccttcagttatccgcaaacaaca 43659048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 43654318 - 43654405
Alignment:
Q  52 gataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 139  Q
    |||||||||||||||||||||| | ||||||||||| ||||||  ||| |||||||||||||||||||| ||||||||| ||||||||    
T  43654318 gataattccttagttcagtgacattgtcacgcctcatgttttatgtttcattttcttgttttgcaggttgtgatccttcagtcatccg 43654405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 6799125 - 6799265
Alignment:
Q  8 tgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttct 107  Q
    ||||| |||||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  6799125 tgagaagaacctgtagtactttgggggagtcgcgcaattctgcggataattccttagttcagtgacatagtcacgccacaggttttactttttattttct 6799224  T
Q  108 tgttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    | ||||||||||| ||||||||| |||||||| | ||||||    
T  6799225 tattttgcaggttgtgatccttcagtcatccgcaaacaaca 6799265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 8996206 - 8996067
Alignment:
Q  11 gatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtg--acttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||||||| | |||||||||||||||||||||| |||||||||||||| |||||  || || |||| ||| || |||||| ||||||||  ||    
T  8996206 gatgaacctgttgtattttgggggagttgtgcaattctgcggataattccttagtccagtgacacgtaatcacaccttagattttacgttttatttcatt 8996107  T
Q  109 gttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    |||||||||| | ||||||||| |||||||| | ||||||    
T  8996106 gttttgcaggatgtgatccttcagtcatccgcatacaaca 8996067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 8986733 - 8986604
Alignment:
Q  11 gatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgact--tagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||| |||||  |||||||||||| |||||||| | |||||||||||||| |||||||   |||||||||||||| |||||| ||||||||  ||    
T  8986733 gatgaaccttttgtatgctgggggagttgcgcaattctacggataattccttagtccagtgacacgtagtcacgcctcagattttacgttttatttcatt 8986634  T
Q  109 gttttgcaggttatgatccttccgtcatcc 138  Q
    |||||||||| | ||||||||| |||||||    
T  8986633 gttttgcagggtgtgatccttcggtcatcc 8986604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 42528436 - 42528324
Alignment:
Q  19 tgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcagg 118  Q
    ||||||| | ||||||||||| |||||||||||||||||||||||        || ||||||||||||| ||||||| ||| ||||||||||||||||||    
T  42528436 tgttgtattttgggggagttgcgcaattctgcagataattcctta--------acatagtcacgcctcaagttttacgtttcattttcttgttttgcagg 42528345  T
Q  119 ttatgatccttccgtcatccg 139  Q
    || ||||||||| ||||||||    
T  42528344 ttgtgatccttcagtcatccg 42528324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 6806927 - 6806981
Alignment:
Q  65 ttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggtt 120  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||    
T  6806927 ttcagtgacatagtcacgcctcaggttttac-ttttattttcttgttttgtaggtt 6806981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 55480858 - 55480736
Alignment:
Q  20 gttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcag---gttttactttttattttcttgttttgca 116  Q
    |||||| | ||||||| |||||||||| ||  ||||||| |||||| || ||| | ||||||| |||||   |||||||||  |||||| ||||||||||    
T  55480858 gttgtattatgggggaattgtgcaattttgtggataatttcttagtccaatgagtaagtcacgtctcagcaggttttacttcatattttattgttttgca 55480759  T
Q  117 ggttatgatccttccgtcatccg 139  Q
    ||||||  |||||| ||||||||    
T  55480758 ggttattgtccttcggtcatccg 55480736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 28703804 - 28703665
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||| || ||| ||||||  |||||||||||||||||||    
T  28703804 gagatgaacttgttgtactttgggggagttgcgcaattctgcggataattccttagttcagtgacataatcatgcctcaaattttactttttattttctt 28703705  T
Q  109 gttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    ||||||||||||||||||||||  ||||||| || |||||    
T  28703704 gttttgcaggttatgatccttcactcatccgcagtcaaca 28703665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 32893715 - 32893788
Alignment:
Q  75 tagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccgtagacaaca 148  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| | ||||||    
T  32893715 tagtcacgcctcaggttttacttgttattttcttgttttgcaggttatgatccttcagtcatccgcaaacaaca 32893788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 36612068 - 36611959
Alignment:
Q  29 tgggggagttgtgcaattctgcagataattccttagttcagtgact-tagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatcc 127  Q
    ||||||||||| |||||||||   |||||| |||||| |||||||  ||||||||||| || |||||| ||| ||||| |||||||||||||| ||||||    
T  36612068 tgggggagttgcgcaattctgtgaataatttcttagtccagtgacggtagtcacgccttagattttacgtttcattttattgttttgcaggttgtgatcc 36611969  T
Q  128 ttccgtcatc 137  Q
    ||| ||||||    
T  36611968 ttcagtcatc 36611959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 32893846 - 32893791
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttag 64  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  32893846 gagatgaacctgttgtactctgggggagttgcgcaattctgcggataatttcttag 32893791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 8878929 - 8878851
Alignment:
Q  14 gaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttt 92  Q
    |||||||||||| ||||||||| ||| |||||  ||| |||||||  ||||||||||||| ||||||||||||||||||    
T  8878929 gaacctgttgtattctgggggaattgcgcaatcttgctgataattgtttagttcagtgacgtagtcacgcctcaggttt 8878851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 8363300 - 8363422
Alignment:
Q  8 tgagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttct 107  Q
    |||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||| |||||||    
T  8363300 tgagatgaccctgttgtactctggaggagttgcgcaattctgcggataattccttagttcagtgacatagtcacgcatcaggttttacctttcattttct 8363399  T
Q  108 tgttttgcaggttatgatccttc 130  Q
    ||||||||||||| |||||||||    
T  8363400 tgttttgcaggttgtgatccttc 8363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 673184 - 673109
Alignment:
Q  216 ctttttgtggacacaaaattagcattgaagtttcatgtgtcacattttaccatattttcttaaaatgagttcattt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  673184 ctttttgtggacacaaaattagcattgaagtttcatgtgtcacattttaccatattttcttaaaatgagttcattt 673109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 8365589 - 8365668
Alignment:
Q  60 cttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtcatccg 139  Q
    |||||||||||||| |||||||||||||||||||| |||| || |||||||||| |||||| ||||||||| ||||||||    
T  8365589 cttagttcagtgacatagtcacgcctcaggttttatttttcatgttcttgtttttcaggttgtgatccttcagtcatccg 8365668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 27529086 - 27529216
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||| ||||| | |||| ||||||||||||| ||| ||||||||||||||  |||||| |||||||||||||  ||| | |||  ||||| ||    
T  27529086 gagatgaacctattgtattatgggtgagttgtgcaattatgcggataattccttagtctagtgacgtagtcacgcctcatttttcagtttacattttatt 27529185  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
    |||||| || || ||||| ||| ||||||||    
T  27529186 gttttgtagtttgtgatcattcggtcatccg 27529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 33357996 - 33358055
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttca 68  Q
    ||||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||    
T  33357996 gagatgaacctgttgtactctggaggagttgcgcaattctacggataattccttagttca 33358055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 40862886 - 40862774
Alignment:
Q  14 gaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgtttt 113  Q
    |||||||||||| | ||| ||| ||||| |||  ||| ||||||| ||||||||||||| |  ||||| |||||  |||||||||  ||||| |||||||    
T  40862886 gaacctgttgtattttggaggaattgtgtaatcatgcggataattacttagttcagtgattacgtcacacctcatattttactttacattttattgtttt 40862787  T
Q  114 gcaggttatgatc 126  Q
      ||||| |||||    
T  40862786 ataggttgtgatc 40862774  T

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Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 13016481 - 13016351
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    |||| |||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||| | |||||||||||| |||||| |||||||||||     
T  13016481 gagaagaacctgttgtactatggggaagttacgcaattctgcagataattccttagttcagtgacattgtcacgcctcagattttacgttttattttctg 13016382  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
     ||||||||||||||||||||  ||||||||    
T  13016381 tttttgcaggttatgatcctttagtcatccg 13016351  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 47323268 - 47323395
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    |||| |||| ||||||||||| ||||| ||| |||||| ||| |||||||||||||||| ||||| |||||||||   ||||||||||||||||||||||    
T  47323268 gagaagaacatgttgtactcttggggaattgcgcaattttgcggataattccttagttcggtgacatagtcacgc---aggttttactttttattttctt 47323364  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
    |||||||||||| ||||||||| ||||||||    
T  47323365 gttttgcaggttgtgatccttcagtcatccg 47323395  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 47326868 - 47326972
Alignment:
Q  35 agttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttcttgttttgcaggttatgatccttccgtc 134  Q
    ||||| |||||||||| |||| ||||||||||| ||||| |||||||||||||  ||||||| |||| |||||||||||||||||| ||||||||| |||    
T  47326868 agttgcgcaattctgcggatatttccttagttctgtgacatagtcacgcctcaaattttactctttactttcttgttttgcaggttgtgatccttctgtc 47326967  T
Q  135 atccg 139  Q
    |||||    
T  47326968 atccg 47326972  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 27074981 - 27075106
Alignment:
Q  16 acctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-ggtttta-ctttttattttcttgtttt 113  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||| |||||||    
T  27074981 acctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttattgtttt 27075080  T
Q  114 gcaggttatgatccttccgtcatccg 139  Q
    ||||||| |||| |||| ||||||||    
T  27075081 gcaggttgtgatacttcagtcatccg 27075106  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 27078346 - 27078469
Alignment:
Q  18 ctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-ggtttta-ctttttattttcttgttttgc 115  Q
    |||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||  ||||||||    
T  27078346 ctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgttttgc 27078445  T
Q  116 aggttatgatccttccgtcatccg 139  Q
    ||||| |||| |||| ||||||||    
T  27078446 aggttgtgatacttcagtcatccg 27078469  T

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Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 26050014 - 26050139
Alignment:
Q  16 acctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-ggtttta-ctttttattttcttgtttt 113  Q
    |||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||  ||||||    
T  26050014 acctgttgtattctgggggagttgcgcaattctgcggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgtttt 26050113  T
Q  114 gcaggttatgatccttccgtcatccg 139  Q
    ||||||| |||| |||| ||||||||    
T  26050114 gcaggttgtgatacttcagtcatccg 26050139  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 40254861 - 40254988
Alignment:
Q  9 gagatgaacctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttttactttttattttctt 108  Q
    ||||||||||||||||||| ||| ||||||| |||||||||  |||||||||||||||||||||| |||||||||||   ||||||| ||||||||| ||    
T  40254861 gagatgaacctgttgtactatggaggagttgcgcaattctgtggataattccttagttcagtgacatagtcacgcct---gttttacgttttattttatt 40254957  T
Q  109 gttttgcaggttatgatccttccgtcatccg 139  Q
     |||| |||||| ||||||||| ||||||||    
T  40254958 attttacaggttgtgatccttcagtcatccg 40254988  T

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Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 26053428 - 26053553
Alignment:
Q  16 acctgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctca-ggtttta-ctttttattttcttgtttt 113  Q
    |||||||||| ||||||||||||| |||||||| | |||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||  ||||||    
T  26053428 acctgttgtattctgggggagttgcgcaattctacggataattccttagtccagtgacttagtcacgcctcagggttttacctttttagtttactgtttt 26053527  T
Q  114 gcaggttatgatccttccgtcatccg 139  Q
    ||||||| |||| |||| ||||||||    
T  26053528 gcaggttgtgatacttcagtcatccg 26053553  T

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Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 92
Target Start/End: Original strand, 206191 - 206264
Alignment:
Q  19 tgttgtactctgggggagttgtgcaattctgcagataattccttagttcagtgacttagtcacgcctcaggttt 92  Q
    ||||||| ||||||||||||| || ||| ||  |||||||||||||| || |||| ||||||||||||| ||||    
T  206191 tgttgtattctgggggagttgcgctattatgtggataattccttagtccaatgacctagtcacgcctcaagttt 206264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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