View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_56 (Length: 319)
Name: NF19193_low_56
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 36568463 - 36568749
Alignment:
| Q |
11 |
caaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaac |
110 |
Q |
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| T |
36568463 |
caaaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaac |
36568562 |
T |
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| Q |
111 |
atgcaggtagatatatcattatcaannnnnnnnnnnntaaagaccttgttcttttgttttgtttcatctttcacacttcccttataaatcaagatttaaa |
210 |
Q |
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| T |
36568563 |
atgcaggtagatatatcattatcaaacacacacacactaaagaccttgttcttttgttttgtttcatctttcacacttcccttataaatcaagatttaaa |
36568662 |
T |
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| Q |
211 |
ataaaaggagaaaaataataatttttctttgctactgcttctgcttctgcttcccttttctgtcaataactttcttccttgatttgaaccatt |
303 |
Q |
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| T |
36568663 |
ataaaaggagaaaaataataatttttctttgcta------ctgcttctgcttcccttttctgtcaataactttcttccttgatttgaaccatt |
36568749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 21038455 - 21038358
Alignment:
| Q |
21 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggt |
118 |
Q |
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| T |
21038455 |
tattggatccctactccttctcagattcttattggtcctacacaattctcttgtcctgtttgctgcaaaaccttcaacagatacaacaacatgcaggt |
21038358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 41939369 - 41939469
Alignment:
| Q |
18 |
caatattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcagg |
117 |
Q |
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| T |
41939369 |
caatattggatcccttctcctgctcaaatccttgttggtcctacccagttttcttgcactgtttgcaacaaaaccttcaaccgtttcaacaacatgcagg |
41939468 |
T |
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| Q |
118 |
t |
118 |
Q |
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| T |
41939469 |
t |
41939469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 41937599 - 41937702
Alignment:
| Q |
21 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaacatgcaggtag |
120 |
Q |
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| T |
41937599 |
tattggatccctacccctgctcagattctaatcggtccaacacagttttcatgccctctttgtttcaagaccttcaatagatacaacaacatgcaggtat |
41937698 |
T |
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| Q |
121 |
atat |
124 |
Q |
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|||| |
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| T |
41937699 |
atat |
41937702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 13518836 - 13518748
Alignment:
| Q |
21 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
109 |
Q |
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| T |
13518836 |
tattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13518748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 13608369 - 13608281
Alignment:
| Q |
21 |
tattggatccctactccttctcaaattctcattggtccaactcagttctcttgccctgtttgctccaaaactttcaatagatataacaa |
109 |
Q |
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| T |
13608369 |
tattggattccaacaccttctcaaattctcattggtcctacacaattctcatgtcctgtgtgctctaaaactttcaacagatacaacaa |
13608281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 22296719 - 22296658
Alignment:
| Q |
13 |
aaggacaatattggatccctactccttctcaaattctcattggtccaactcagttctcttgc |
74 |
Q |
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| T |
22296719 |
aaggtcaatattggattccttcacctgctcaaatcctcattggaccaacacagttctcttgc |
22296658 |
T |
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