View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_57 (Length: 319)
Name: NF19193_low_57
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 54989310 - 54989605
Alignment:
| Q |
9 |
tattatcctttcgcatgcagctgcagttgatatttatagaaacaaataccaggtaatttagtaaaaagacgtcacaactttgtagcagcacgttagggac |
108 |
Q |
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| T |
54989310 |
tattatcctatcgcatgcagctgcagttgatatttatagaaacagataccaggtaatttagtaaaaagacgtcacaactttgtagcagcacgttagggac |
54989409 |
T |
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| Q |
109 |
tcaaatttattgtatttctatttaagctaatcaaaaaataattatgcttctagttttacaaatcaaagtggaaagtatgtatgactgaattctcattcaa |
208 |
Q |
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| T |
54989410 |
tcaaatttattgtatttctatttaagctaatcaaaaaataattatgcttctagttttacaaatcaaagtggaaagtatgtatgactgaattctcattcaa |
54989509 |
T |
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| Q |
209 |
aacattgtaaacttgatttacttttaacgccgcatccaggccgagcaaggaggacaaattggcattgtcgtacacgttgactggtttgaaccatat |
304 |
Q |
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| T |
54989510 |
aacattgtaaacttgatttacttttaacgccgcatccaggccgagcaaggaggacaaattggcattgtcgtacacgttgactggtttgaaccatat |
54989605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 55002838 - 55002894
Alignment:
| Q |
9 |
tattatcctttcgcatgcagctgcagttgatatttatagaaacaaataccaggtaat |
65 |
Q |
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||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
55002838 |
tattatcctgtcacatgcagctgcagttgatatctatagaaccaaataccaggtaat |
55002894 |
T |
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