View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_58 (Length: 318)
Name: NF19193_low_58
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 42465240 - 42464925
Alignment:
| Q |
1 |
agtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaagaaaatggtgttactgtac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42465240 |
agtattgctagccaatgatgtagttacatggagaatgatccaggaatattatatcattaccgtatttcttaaataagtaaagaaaatggtgttactgtac |
42465141 |
T |
|
| Q |
101 |
aaaatataaagtcgtgccaacatgtttaatcatatgatatatcc----agaggattatcaattctttcacagctgcacgttgttaattatataattaaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42465140 |
aaaatataaagtcgtgccaacatgtttaatcatatgatatatcctctcagaggattaacaattctttcacagctgcacgttgttaattatataattaaac |
42465041 |
T |
|
| Q |
197 |
attttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggtttttagctagtctagattctagg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42465040 |
attttcactagctgaatttagatattcaaaaagtacatagaagtccatgaaattgaacttaaatacctcaaagtggtttttagctagtctagagtctagg |
42464941 |
T |
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| Q |
297 |
catttatattcttcga |
312 |
Q |
| |
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|||||||||| ||||| |
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| T |
42464940 |
catttatatttttcga |
42464925 |
T |
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