View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_59 (Length: 317)

Name: NF19193_low_59
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_59
NF19193_low_59
[»] chr6 (11 HSPs)
chr6 (1-306)||(28934959-28935264)
chr6 (99-186)||(12102274-12102361)
chr6 (231-289)||(11936185-11936243)
chr6 (231-289)||(11948165-11948223)
chr6 (98-186)||(11936279-11936367)
chr6 (98-186)||(11948259-11948347)
chr6 (98-188)||(6423224-6423314)
chr6 (98-175)||(6402867-6402944)
chr6 (5-46)||(6415880-6415921)
chr6 (98-163)||(6585264-6585329)
chr6 (120-188)||(6432190-6432258)
[»] chr8 (8 HSPs)
chr8 (97-188)||(18315275-18315366)
chr8 (97-188)||(17636403-17636494)
chr8 (98-163)||(17628041-17628106)
chr8 (98-188)||(27922515-27922605)
chr8 (231-289)||(28246205-28246263)
chr8 (97-186)||(21235564-21235653)
chr8 (2-46)||(44736446-44736490)
chr8 (119-181)||(34936172-34936234)
[»] chr4 (25 HSPs)
chr4 (98-168)||(553486-553556)
chr4 (98-174)||(1548440-1548516)
chr4 (2-46)||(12121601-12121645)
chr4 (105-188)||(1519144-1519227)
chr4 (98-188)||(8184032-8184122)
chr4 (97-186)||(570357-570446)
chr4 (119-168)||(1600447-1600496)
chr4 (89-163)||(7225910-7225984)
chr4 (98-168)||(8187113-8187183)
chr4 (118-188)||(12116577-12116647)
chr4 (231-292)||(644961-645022)
chr4 (2-46)||(553390-553434)
chr4 (2-46)||(1489505-1489549)
chr4 (2-46)||(1508147-1508191)
chr4 (138-181)||(659756-659799)
chr4 (89-172)||(55505126-55505209)
chr4 (227-289)||(553606-553668)
chr4 (98-188)||(7307867-7307957)
chr4 (12-46)||(8184174-8184208)
chr4 (119-188)||(12121459-12121528)
chr4 (2-46)||(546824-546868)
chr4 (2-46)||(644742-644786)
chr4 (2-46)||(1513548-1513592)
chr4 (2-46)||(1537911-1537955)
chr4 (2-46)||(55505249-55505293)
[»] chr5 (2 HSPs)
chr5 (89-181)||(41901544-41901636)
chr5 (98-188)||(32267482-32267572)
[»] chr2 (3 HSPs)
chr2 (120-173)||(32785789-32785842)
chr2 (2-46)||(45245229-45245273)
chr2 (97-181)||(45245094-45245178)
[»] chr3 (3 HSPs)
chr3 (3-46)||(51113925-51113968)
chr3 (231-284)||(1657378-1657431)
chr3 (125-188)||(51120895-51120958)
[»] chr1 (3 HSPs)
chr1 (12-46)||(9580990-9581024)
chr1 (2-44)||(43634090-43634132)
chr1 (89-157)||(7554486-7554554)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 28934959 - 28935264
Alignment:
Q  1 agatctctcttagttgtgtgcaattttctaccacatgcttcactccnnnnnnngtaacacgatcgcagtttaacagcaacaggcgcataagtccatgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||    
T  28934959 agatctctcttagttgtgtgcaattttctaccacatgcttcactcctttttttgtaacactatcgcagtttaacagcaacaggcgcataagtccatgaca 28935058  T
Q  101 actctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcattaatccatttagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28935059 actctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcattaatccatttagg 28935158  T
Q  201 ttcagtttcaaacctaaacagtaggctaagttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatacgtcatcacaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28935159 ttcagtttcaaacctaaacagtaggctaagttcaaatgtctaatgttaagacatttcatcaaaacataaacaataccttcttcacatacgtcatcacaat 28935258  T
Q  301 ggttca 306  Q
    ||||||    
T  28935259 ggttca 28935264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 12102274 - 12102361
Alignment:
Q  99 caactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 186  Q
    |||||||||||||||| |  |||| |||| |  ||||||| |||||||||||||||||||||||| |||| |||||| ||||| ||||    
T  12102274 caactctttgaaatcagatagagttcttcgttatcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 11936243 - 11936185
Alignment:
Q  231 ttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatac 289  Q
    ||||||||||||||||||  |||| |||| ||||||| |||||||||||||||| ||||    
T  11936243 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatac 11936185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 11948223 - 11948165
Alignment:
Q  231 ttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatac 289  Q
    ||||||||||||||||||  |||| |||| ||||||| |||||||||||||||| ||||    
T  11948223 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatac 11948165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 11936367 - 11936279
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 186  Q
    |||||||||||| |||  |  ||||| || ||||||||||||||||  |||||||| ||||||||| |||| |||||| ||||| ||||    
T  11936367 acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11936279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 11948347 - 11948259
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 186  Q
    |||||||||||| |||  |  ||||| || ||||||||||||||||  |||||||| ||||||||| |||| |||||| ||||| ||||    
T  11948347 acaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 11948259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 6423224 - 6423314
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||||||||| ||| ||  ||||| || ||||  ||||||||||| |||||||||||||||||| || | |||||| | ||| ||||||    
T  6423224 acaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 6402867 - 6402944
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaac 175  Q
    |||| ||||||| ||||||  ||||| |||||| |||||  | |||| ||||||||||||||| || |||||||||||    
T  6402867 acaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaac 6402944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6415880 - 6415921
Alignment:
Q  5 ctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcc 6415921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 6585329 - 6585264
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctc 163  Q
    |||||||||||| ||||||  ||||| |||||| |||||  |||||| |||||||||||| |||||    
T  6585329 acaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctc 6585264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 6432190 - 6432258
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||| |||||| ||||| ||||||| |||||||||||||||||  || | |||||| ||||| ||||||    
T  6432190 agtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcatt 6432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 18315366 - 18315275
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    ||||||||||||| ||||||  |||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||| | ||| ||||||    
T  18315366 gacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 17636494 - 17636403
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    ||||||||||||| ||||||   | ||||||||||||||||| ||| |||||||||||||||||||| | || |||||| ||||| ||||||    
T  17636494 gacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 17628106 - 17628041
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctc 163  Q
    |||| ||||||| ||||||| |||||||| ||| |||||||| |||||||||||||||||||||||    
T  17628106 acaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctc 17628041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 27922515 - 27922605
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||||||||| |||| |   ||||||||||| |||||  |||||| |||||||||||||||||| | || |||||| ||||| ||||||    
T  27922515 acaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 28246263 - 28246205
Alignment:
Q  231 ttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatac 289  Q
    ||||||||||||||||||  |||| |||| ||||||| |||||||||||||||| ||||    
T  28246263 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttcagatac 28246205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 21235564 - 21235653
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 186  Q
    |||| ||||||||||||| |  |||| |||| |  ||||||| ||||| |||||||||||||||||| |||| |||||| ||||| ||||    
T  21235564 gacagctctttgaaatcaaatagagttcttcgttatcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 44736446 - 44736490
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||    
T  44736446 gatctctcttagttgtgtacaattttctacaacatgtttcactcc 44736490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 34936234 - 34936172
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaa 181  Q
    ||||| || ||| ||||||||||||| |||||||| ||||||||| ||||  |||||||||||    
T  34936234 gagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaa 34936172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 553486 - 553556
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagtt 168  Q
    ||||||||||||||||||| | ||||||||||| ||||||||||||  |||||||||||||||||| ||||    
T  553486 acaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtt 553556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 1548516 - 1548440
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaa 174  Q
    |||||||||||| |||||| |||||| |||||| ||||  |||||||||||||||||||||||||| |||| |||||    
T  1548516 acaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaa 1548440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 12121645 - 12121601
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  12121645 gatctctcttagttgtgtgcatttttctaccacatgcttcactcc 12121601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 1519227 - 1519144
Alignment:
Q  105 tttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    ||||| ||||||  ||||||||  || ||||| |||||||||||||||||||||||||| |||| |||||| ||||| ||||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcatt 1519144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 8184122 - 8184032
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||||||||| ||  ||  |||||||  ||| |||||||||||||||||||||||||||||||| ||||  ||||| ||||| ||||||    
T  8184122 acaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 570357 - 570446
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 186  Q
    |||||||||||||||||| |  |||| |||| |  ||||||| ||||| ||||||||||||||||||||||| | |||| ||||| ||||    
T  570357 gacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttca 570446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 1600447 - 1600496
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagtt 168  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtt 1600496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 7225984 - 7225910
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctc 163  Q
    |||||||  |||||||||||| |||||||  ||| |||  || |||||||||||||||||||||||||| |||||    
T  7225984 aagtccacaacaactctttgatatcacacgaagtcctttgtcatcaactcttgtatgtgacaagttcaagacctc 7225910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 8187183 - 8187113
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagtt 168  Q
    |||||||||||||||  ||   |||| || ||| |||||||||||||||||||||||||||||||| ||||    
T  8187183 acaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtt 8187113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 12116647 - 12116577
Alignment:
Q  118 tgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||| |||||| ||||| |||||||||||||||||||||||||| |  |  ||||||||||| ||||||    
T  12116647 tgagtgattcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcatt 12116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 644961 - 645022
Alignment:
Q  231 ttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatacgtc 292  Q
    ||||||||||||||||||  |||| |||| ||||||| ||| |||||||||||| |||||||    
T  644961 ttcaaatgtctaatgttacaacatatcattaaaacatgaaccataccttcttcagatacgtc 645022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 553390 - 553434
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||||    
T  553390 gatctctctaagttgtgtgcagttttctaccacatgattcactcc 553434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1489549 - 1489505
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  1489549 gatctctcttagttgtgcgcatttttctagcacatgcttcactcc 1489505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1508191 - 1508147
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||    
T  1508191 gatctctcttagttgtgtgcatttttctagcgcatgcttcactcc 1508147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 659756 - 659799
Alignment:
Q  138 cttgtatgtgacaagttcaacacctcgagttggggaacatcaaa 181  Q
    |||||||||||||||||||||||||| |||| |||||| |||||    
T  659756 cttgtatgtgacaagttcaacacctctagtttgggaacttcaaa 659799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 55505209 - 55505126
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttgggg 172  Q
    ||||||| ||||| |||||||  |||||   |||| | ||||||||||  |||||| |||||||||||||||||| ||||||||    
T  55505209 aagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctctagttgggg 55505126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 553606 - 553668
Alignment:
Q  227 taagttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttcacatac 289  Q
    ||||||||||||||||||||||  ||||||| | ||||||| ||||| | |||||||| ||||    
T  553606 taagttcaaatgtctaatgttacaacatgtccttaaaacatgaacaacagcttcttcagatac 553668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 7307867 - 7307957
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||||||||| |||| ||  ||||||||||| ||||||  ||||| |||||||||||| ||||| | || |||||| | ||| ||||||    
T  7307867 acaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 8184208 - 8184174
Alignment:
Q  12 agttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||| |||||||||||||||    
T  8184208 agttgtgtgcaattttctagcacatgcttcactcc 8184174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 188
Target Start/End: Complemental strand, 12121528 - 12121459
Alignment:
Q  119 gagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    ||||| |||||| |||||  |||||| ||||||||||||||| || |||| |||||| ||||| ||||||    
T  12121528 gagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 546824 - 546868
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||| |||||| ||||||| |||||| ||||||||    
T  546824 gatctctcttagttttgtgcagttttctagcacatgtttcactcc 546868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 644742 - 644786
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||| ||||||||||| ||||| |||||||| ||||||||    
T  644742 gatctctctcagttgtgtgcatttttcaaccacatgtttcactcc 644786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1513592 - 1513548
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||| ||||||||||| ||||||| |||| ||||||||||    
T  1513592 gatctctctcagttgtgtgcatttttctagcacaagcttcactcc 1513548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 1537955 - 1537911
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||| ||||| ||||||| ||||| |||||||||    
T  1537955 gatctctcttagttgagtgcatttttctagcacatacttcactcc 1537911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 55505293 - 55505249
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||||||||||| ||||||| ||| || ||||||||    
T  55505293 gatctctcttagttgtgtgcagttttctaacacgtgtttcactcc 55505249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Complemental strand, 41901636 - 41901544
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaa 181  Q
    |||||||  |||||||||||| |||| |   ||||||||||| |||||| |||||| |||||||||||||||||| |||| |||||| |||||    
T  41901636 aagtccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaa 41901544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 32267482 - 32267572
Alignment:
Q  98 acaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||||||||| |||| |   ||||||||||| |||||| |||| |||||||||||||| ||||| | || |||||| ||||| ||||||    
T  32267482 acaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 32785842 - 32785789
Alignment:
Q  120 agtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttgggga 173  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  32785842 agtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttggga 32785789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 45245273 - 45245229
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||    
T  45245273 gatctctgtaagttgtgtgcaattttctaccacatgtttcactcc 45245229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 45245178 - 45245094
Alignment:
Q  97 gacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaa 181  Q
    ||||||||||||| ||||||  ||||| |||||| |||||  |||| | |||||| ||||||||||| ||||  ||||| |||||    
T  45245178 gacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaa 45245094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 51113968 - 51113925
Alignment:
Q  3 atctctcttagttgtgtgcaattttctaccacatgcttcactcc 46  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  51113968 atctctcttagttttgtgcatttttctaccacatgcttcactcc 51113925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 1657378 - 1657431
Alignment:
Q  231 ttcaaatgtctaatgttaagacatgtcatcaaaacataaacaataccttcttca 284  Q
    ||||||||||||||||||  |||| |||| ||||||| ||||||||||||||||    
T  1657378 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaataccttcttca 1657431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 51120958 - 51120895
Alignment:
Q  125 ttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 188  Q
    |||||| |||||||||||||| ||||||||||||||||| | || | |||| ||||| ||||||    
T  51120958 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 9580990 - 9581024
Alignment:
Q  12 agttgtgtgcaattttctaccacatgcttcactcc 46  Q
    |||||||||||||||||||||||| ||||||||||    
T  9580990 agttgtgtgcaattttctaccacacgcttcactcc 9581024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 43634090 - 43634132
Alignment:
Q  2 gatctctcttagttgtgtgcaattttctaccacatgcttcact 44  Q
    |||||||||||||||| |||||||||||| ||| |||||||||    
T  43634090 gatctctcttagttgtctgcaattttctaacacgtgcttcact 43634132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 7554486 - 7554554
Alignment:
Q  89 aagtccatgacaactctttgaaatcacactgagtgcttcatcgtcaactcttgtatgtgacaagttcaa 157  Q
    |||||||  |||||||||||| |||| |  |||||||||||| ||||| ||||||| ||| ||||||||    
T  7554486 aagtccaccacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University