View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_6 (Length: 603)

Name: NF19193_low_6
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_6
NF19193_low_6
[»] chr5 (9 HSPs)
chr5 (250-529)||(9142047-9142321)
chr5 (16-191)||(9142383-9142566)
chr5 (531-585)||(6240168-6240222)
chr5 (531-585)||(6234542-6234595)
chr5 (278-325)||(35262798-35262845)
chr5 (482-530)||(1970515-1970563)
chr5 (479-522)||(26712386-26712429)
chr5 (479-522)||(26982124-26982167)
chr5 (479-529)||(4555387-4555437)
[»] chr4 (16 HSPs)
chr4 (263-529)||(55514148-55514402)
chr4 (13-191)||(55513887-55514072)
chr4 (264-324)||(36013709-36013769)
chr4 (264-324)||(39870021-39870081)
chr4 (400-520)||(47326708-47326828)
chr4 (400-520)||(47341504-47341624)
chr4 (264-324)||(47326553-47326613)
chr4 (264-324)||(47341349-47341409)
chr4 (385-522)||(36013858-36013993)
chr4 (263-325)||(39112499-39112563)
chr4 (385-522)||(39870170-39870306)
chr4 (278-319)||(38010027-38010068)
chr4 (482-531)||(30808619-30808668)
chr4 (264-301)||(23574053-23574092)
chr4 (482-530)||(39429224-39429272)
chr4 (482-522)||(41261129-41261169)
[»] chr3 (4 HSPs)
chr3 (258-324)||(31598545-31598611)
chr3 (385-522)||(31598700-31598835)
chr3 (482-532)||(43768023-43768073)
chr3 (482-531)||(44406960-44407009)
[»] chr6 (2 HSPs)
chr6 (276-324)||(16765477-16765525)
chr6 (434-522)||(16764932-16765020)
[»] chr1 (6 HSPs)
chr1 (278-319)||(2687136-2687177)
chr1 (482-529)||(29334214-29334261)
chr1 (482-529)||(43316357-43316404)
chr1 (455-522)||(49420091-49420158)
chr1 (438-499)||(51610178-51610239)
chr1 (457-529)||(7463415-7463487)
[»] chr8 (3 HSPs)
chr8 (482-530)||(42345393-42345441)
chr8 (482-529)||(13935054-13935101)
chr8 (482-522)||(35840531-35840571)
[»] chr2 (3 HSPs)
chr2 (420-522)||(24383001-24383104)
chr2 (492-531)||(44094828-44094867)
chr2 (482-522)||(36390964-36391004)
[»] chr7 (2 HSPs)
chr7 (487-529)||(9122650-9122692)
chr7 (474-522)||(35771252-35771300)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 250 - 529
Target Start/End: Complemental strand, 9142321 - 9142047
Alignment:
Q  250 aaattagttgttgataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgtt 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||  |||||||||||||||||||    
T  9142321 aaattagttgttgataaataaataaataattagtttgaataagtctttttt--gaaacaattgggagaggaaaaaaatt--agtatgaatttgtgttgtt 9142226  T
Q  350 ctgagcagtaaagaaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatca 449  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  9142225 ctgagcagtaaagaaaatgatggac-tgggttaatttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgggtagtctatgattaaatca 9142127  T
Q  450 gtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||    
T  9142126 gtgttccaagttaatcaagtggtataaaatagctttcccatggtgggaaacaacttccctttcccatactaaatgccacc 9142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 9142566 - 9142383
Alignment:
Q  16 atagatgaatcaaactccaataaatctccacaaatatggaaaacacgtct-------ttatatgtaatcaagaaaccaa-annnnnnnnattattatttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |        |||||||||||    
T  9142566 atagatgaatcaaactccaataaatctccacaaatatggaaaacacgtctcctcgagttatatgtaatcaagaaaccaatatttttattattattatttc 9142467  T
Q  108 tatatgtaaattcggcaccatcacacatacaaaaactagatctcgttcgacttttctttcatcatcacatattcaaactactta 191  Q
    ||||||||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||    
T  9142466 tatatgtaaattcggcatcatcacacatacaaaaattaaatctggttcgacttttctttcatcatcacatattcaaactactta 9142383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 6240168 - 6240222
Alignment:
Q  531 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgt 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6240168 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgt 6240222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 6234542 - 6234595
Alignment:
Q  531 ttagaaatatgtacaaataaataggtacttgcatcgtgcgtattgaagtagttgt 585  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  6234542 ttagaaatatgtacaaataaa-aggtacttgcattgtgcgtattgaagtagttgt 6234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 35262798 - 35262845
Alignment:
Q  278 attagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 325  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||||    
T  35262798 attagtttgaataagttttattttagaaacagttgggagagggaaaaa 35262845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 530
Target Start/End: Original strand, 1970515 - 1970563
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 530  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||    
T  1970515 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacca 1970563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Original strand, 26712386 - 26712429
Alignment:
Q  479 tagctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  26712386 tagctttcccatggtgggaaacaacttccctttcccatgctaaa 26712429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 522
Target Start/End: Original strand, 26982124 - 26982167
Alignment:
Q  479 tagctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||||||||||| |||||||||||||| |||||| |||||||||    
T  26982124 tagctttcccatggtgggaaacaacttccctttcccatgctaaa 26982167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 479 - 529
Target Start/End: Original strand, 4555387 - 4555437
Alignment:
Q  479 tagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    |||||||||||| || ||||||||||| |||||| ||| ||||||||||||    
T  4555387 tagctttcccatggtaggaaacaacttccctttcccatactaaatgccacc 4555437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 263 - 529
Target Start/End: Original strand, 55514148 - 55514402
Alignment:
Q  263 ataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgttctgagcagtaaag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55514148 ataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaaagttctagtatgaatttgtgttgttctgagcagtaaag 55514247  T
Q  363 aaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctattta 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||                
T  55514248 aaaatggtggacgtgggttagtttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagtagtctatgattaaatcag------------ 55514335  T
Q  463 atcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    || || | |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  55514336 attaaatagtataaaatagctttcccatggtgggaaacaactttcctttcccatgctaaatggcacc 55514402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 55513887 - 55514072
Alignment:
Q  13 aatatagatgaatcaaactccaataaatctccacaaatatggaaaacacgtct-------ttatatgtaatcaagaaaccaaannnnnnnnattattatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||         |||||||||    
T  55513887 aatatagatgaatcaaactccaataaatctccacaaatatggaaaacacgtctcctggagttatatgtaatcaagaaaccaatattttattattattatt 55513986  T
Q  106 tctatatgtaaattcggcaccatcacacatacaaaaactagatctcgttcgacttttctttcatcatcacatattcaaactactta 191  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||    
T  55513987 tctatatgtaaattcggcatcatcacacatacaaaaactagatctggtttgacttttctttcatcatcacatattcaaattactta 55514072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 36013709 - 36013769
Alignment:
Q  264 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36013709 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 36013769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 39870021 - 39870081
Alignment:
Q  264 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39870021 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 39870081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 520
Target Start/End: Original strand, 47326708 - 47326828
Alignment:
Q  400 ttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 499  Q
    |||||||||  ||||| |||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | ||||||||| ||||||||    
T  47326708 ttgaagacagtgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaa 47326807  T
Q  500 caactttcctttcacatgcta 520  Q
    ||||||||||||| |||||||    
T  47326808 caactttcctttcccatgcta 47326828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 400 - 520
Target Start/End: Original strand, 47341504 - 47341624
Alignment:
Q  400 ttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 499  Q
    |||||||||  ||||| |||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | ||||||||| ||||||||    
T  47341504 ttgaagacagtgtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactttcccatggtgggaaa 47341603  T
Q  500 caactttcctttcacatgcta 520  Q
    ||||||||||||| |||||||    
T  47341604 caactttcctttcccatgcta 47341624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 47326553 - 47326613
Alignment:
Q  264 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    ||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47326553 taaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagaggaaaaa 47326613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 47341349 - 47341409
Alignment:
Q  264 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    ||||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||||||    
T  47341349 taaataagtaagtaattagtttgaataagtcttattttaagaacaattgggagaggaaaaa 47341409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 385 - 522
Target Start/End: Original strand, 36013858 - 36013993
Alignment:
Q  385 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 484  Q
    ||||||| |||||||||||||||   ||||| |||||||||| || |  |||||||||||||||||||||||  ||||||| |   ||  |||| | |||    
T  36013858 ttcaatctcatgaggttgaagact--gtaaaaaagatatggtatgtgtggtctatgattaaatcagtgttccactttaatctaactgttcaaaaaaactt 36013955  T
Q  485 tcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||||| |||| ||||||||||| |||| |||||||||    
T  36013956 tcccatggtggtaaacaactttcatttcccatgctaaa 36013993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 39112563 - 39112499
Alignment:
Q  263 ataaataaataaataat--tagtttgaataagtcttattttagaaacaattgggagaggaaaaaa 325  Q
    |||||| ||||||||||  |||||||||||||| |||||||||||||| ||||||||||||||||    
T  39112563 ataaatcaataaataatattagtttgaataagttttattttagaaacagttgggagaggaaaaaa 39112499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 385 - 522
Target Start/End: Original strand, 39870170 - 39870306
Alignment:
Q  385 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 484  Q
    ||||||| ||||||||||||||||  ||||| |||||||||| || |  |||||| ||||||||||||||||| ||||||| |   || | ||| | |||    
T  39870170 ttcaatctcatgaggttgaagacagtgtaaaaaagatatggtatgtgtggtctattattaaatcagtgttcctctttaatctaactgt-tcaaaaaactt 39870268  T
Q  485 tcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
      |||| ||||||||||||||| ||||| |||||||||    
T  39870269 ctccatggtgggaaacaacttttctttcccatgctaaa 39870306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 38010027 - 38010068
Alignment:
Q  278 attagtttgaataagtcttattttagaaacaattgggagagg 319  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  38010027 attattttgaataagtcttattttagaaacagttgggagagg 38010068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Complemental strand, 30808668 - 30808619
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccat 531  Q
    ||||||||| ||||||||||||| ||||||| |||  |||||||||||||    
T  30808668 ctttcccatggtgggaaacaactctcctttcccattttaaatgccaccat 30808619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 264 - 301
Target Start/End: Original strand, 23574053 - 23574092
Alignment:
Q  264 taaataaataaataat--tagtttgaataagtcttatttt 301  Q
    ||||||||||||||||  ||||||||||||||||||||||    
T  23574053 taaataaataaataatattagtttgaataagtcttatttt 23574092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 530
Target Start/End: Complemental strand, 39429272 - 39429224
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 530  Q
    ||||||||| || |||||||||| ||| ||| |||||||||||||||||    
T  39429272 ctttcccatggtaggaaacaactctccattcccatgctaaatgccacca 39429224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 41261169 - 41261129
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    ||||||||| |||| |||||||||||||||| |||||||||    
T  41261169 ctttcccatggtggaaaacaactttcctttcccatgctaaa 41261129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 31598545 - 31598611
Alignment:
Q  258 tgttgataaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    |||| |||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  31598545 tgttaataaataagtaagtaattattttgaataagtcttattttaggaacaattgggagaggaaaaa 31598611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 522
Target Start/End: Original strand, 31598700 - 31598835
Alignment:
Q  385 ttcaatcccatgaggttgaagacaaagtaaacaagatatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctt 484  Q
    ||||||| ||||||||||||||||  |||||  ||||||||| || |  |||||||||||||||||||||||| ||||||| |   ||  |||| | |||    
T  31598700 ttcaatctcatgaggttgaagacagtgtaaa--agatatggtatgtgtggtctatgattaaatcagtgttcctctttaatctaactgttcaaaaaaactt 31598797  T
Q  485 tcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||||| ||||||||||||||| ||||  |||||||||    
T  31598798 tcccatggtgggaaacaacttttcttttccatgctaaa 31598835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 532
Target Start/End: Complemental strand, 43768073 - 43768023
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccatt 532  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||||    
T  43768073 ctttcccatggtgggaaacaactctccattcccatgctaaatgccaccatt 43768023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 44406960 - 44407009
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccaccat 531  Q
    ||||||||| ||||||||||||| ||  ||| ||||||||||||||||||    
T  44406960 ctttcccatggtgggaaacaactatctattcccatgctaaatgccaccat 44407009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 16765525 - 16765477
Alignment:
Q  276 taattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 324  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16765525 taattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 16765477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 434 - 522
Target Start/End: Complemental strand, 16765020 - 16764932
Alignment:
Q  434 gtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||||||||||||| ||||||||| ||||||| | | ||  |||| | ||| ||||| ||||||||||||||||||||| |||||||||    
T  16765020 gtctatgattaaataagtgttcctctttaatctaattgttcaaaaaaacttccccatggtgggaaacaactttcctttcccatgctaaa 16764932  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 2687177 - 2687136
Alignment:
Q  278 attagtttgaataagtcttattttagaaacaattgggagagg 319  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  2687177 attattttgaataagtcttattttagaaacagttgggagagg 2687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Complemental strand, 29334261 - 29334214
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  29334261 ctttcccatggtgggaaacaactatccattcccatgctaaatgccacc 29334214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Complemental strand, 43316404 - 43316357
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    ||||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  43316404 ctttcccatggtgggaaacaactatccattcccatgctaaatgccacc 43316357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 49420158 - 49420091
Alignment:
Q  455 cctatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    ||||||||||| | ||||  |||| |||||||||||  |||||||||||||||||||| ||| |||||    
T  49420158 cctatttaatctaatggtcaaaaaaagctttcccatcatgggaaacaactttcctttcccatactaaa 49420091  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 51610178 - 51610239
Alignment:
Q  438 atgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagtgggaaa 499  Q
    ||||| |||||||| ||||| | ||||| |||||||||||| | ||||||||| ||||||||    
T  51610178 atgataaaatcagtattcctctctaatctagtggtataaaaaaactttcccatggtgggaaa 51610239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 7463487 - 7463415
Alignment:
Q  457 tatttaatcaagtggtataaaatagctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    ||||||||| | ||||  ||| |||||||||||| |||||||||   ||||||||  ||||||||||||||||    
T  7463487 tatttaatctaatggtcaaaattagctttcccatggtgggaaactcttttccttttccatgctaaatgccacc 7463415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 530
Target Start/End: Complemental strand, 42345441 - 42345393
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacca 530  Q
    ||||||||| ||||||||||||| ||| ||| |||||||||||||||||    
T  42345441 ctttcccatggtgggaaacaactctccattcccatgctaaatgccacca 42345393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 13935054 - 13935101
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    |||||| || |||| |||||||||||||||| ||||||||||||||||    
T  13935054 ctttcctatggtggaaaacaactttcctttcccatgctaaatgccacc 13935101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 35840531 - 35840571
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  35840531 ctttcccatcgtgggaaacaacttccctttcccatgctaaa 35840571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 522
Target Start/End: Original strand, 24383001 - 24383104
Alignment:
Q  420 atatggtgtgagcagtctatgattaaatcagtgttcctatttaatcaagtggtataaaatagctttcccatagt-gggaaacaactttcctttcacatgc 518  Q
    |||||||||  |||||||||||| ||||||||  |||| ||||||  | ||||| |||| | ||||||||| || |||||||||||| |||||| ||| |    
T  24383001 atatggtgtaggcagtctatgataaaatcagtactcctctttaatttaatggtacaaaaaaactttcccatggtggggaaacaacttccctttcccatac 24383100  T
Q  519 taaa 522  Q
    ||||    
T  24383101 taaa 24383104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 492 - 531
Target Start/End: Original strand, 44094828 - 44094867
Alignment:
Q  492 gtgggaaacaactttcctttcacatgctaaatgccaccat 531  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  44094828 gtgggaaacaactttcctttcccatgctaaatcccaccat 44094867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 36391004 - 36390964
Alignment:
Q  482 ctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    ||||||||| |||||||||||||| |||||| |||||||||    
T  36391004 ctttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 529
Target Start/End: Complemental strand, 9122692 - 9122650
Alignment:
Q  487 ccatagtgggaaacaactttcctttcacatgctaaatgccacc 529  Q
    |||| |||||||||||||| |||||| ||||||||||||||||    
T  9122692 ccatggtgggaaacaacttccctttcccatgctaaatgccacc 9122650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 522
Target Start/End: Original strand, 35771252 - 35771300
Alignment:
Q  474 taaaatagctttcccatagtgggaaacaactttcctttcacatgctaaa 522  Q
    |||| |||||||||||| ||||||||||||||| ||||| ||| |||||    
T  35771252 taaattagctttcccatggtgggaaacaactttgctttcccatactaaa 35771300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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