View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_62 (Length: 308)
Name: NF19193_low_62
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_62 |
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| [»] scaffold1064 (2 HSPs) |
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Alignment Details
Target: scaffold1064 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 121 - 304
Target Start/End: Original strand, 1556 - 1739
Alignment:
| Q |
121 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat |
1655 |
T |
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| Q |
221 |
acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcatctcact |
304 |
Q |
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| T |
1656 |
acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcatgtcact |
1739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 1313 - 1421
Alignment:
| Q |
14 |
cctatgttgtatgtctcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313 |
cctatgttgtatgtttcagatctctgtctatttaagatcattgctggtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg |
1412 |
T |
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| Q |
114 |
attaatcaa |
122 |
Q |
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||||||||| |
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| T |
1413 |
attaatcaa |
1421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 121 - 298
Target Start/End: Original strand, 9237555 - 9237732
Alignment:
| Q |
121 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9237555 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgaaat |
9237654 |
T |
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| Q |
221 |
acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcat |
298 |
Q |
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| T |
9237655 |
acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagattcat |
9237732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 121 - 294
Target Start/End: Original strand, 9258880 - 9259053
Alignment:
| Q |
121 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaat |
220 |
Q |
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||||||||| ||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
9258880 |
aatgtattttaaaattgaaatgcataattttccaagttttcttaatttatatattgatttatattactatattggcctttgataatgatcttgttgtaat |
9258979 |
T |
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| Q |
221 |
acattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagat |
294 |
Q |
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| T |
9258980 |
acattaattttcttttcaatttaagcatgttctttaggagtgtcccccatataagctgattgcagttgatagat |
9259053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 9237314 - 9237422
Alignment:
| Q |
14 |
cctatgttgtatgtctcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattctaatacttattattaatatatttg |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
9237314 |
cctatgttgtatgtttcagatctctgtctatttaagatcattgctagtgagagggccatcaaagttccaggtattataatacttattattaatatacttg |
9237413 |
T |
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| Q |
114 |
attaatcaa |
122 |
Q |
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|| |||||| |
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| T |
9237414 |
ataaatcaa |
9237422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 136 - 291
Target Start/End: Original strand, 9173252 - 9173408
Alignment:
| Q |
136 |
tgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaatacattaattttcttt |
235 |
Q |
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||||| |||||| | |||| |||||||||||||||||| |||||||||||||||| | ||||||| |||||||| |||||||||||||||||||||| |
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| T |
9173252 |
tgaaaagcataagtttccaagttttcttagtttatatactgatttatattactatatttccctttgataatgatcttattgtaatacattaattttcttt |
9173351 |
T |
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| Q |
236 |
tctatttaagcaagttatttgggaatgtcacccatat-aagctgattgaagttgata |
291 |
Q |
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| T |
9173352 |
tcaatttaagcatgttctctaggaatgtcccccatttaaagctgattgaagttgata |
9173408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 9166107 - 9166006
Alignment:
| Q |
193 |
tggcctttgaacatgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatag |
292 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||| ||||||||| ||| ||| |||| ||| ||||||||||||||||||||||||||| |
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| T |
9166107 |
tggcctttgataatgatcttgttgcaatacattaattttcttttcaatttaagcatgttctttaggaacgtctcccatataagctgattgaagttgatag |
9166008 |
T |
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| Q |
293 |
at |
294 |
Q |
| |
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|| |
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| T |
9166007 |
at |
9166006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 9166206 - 9166127
Alignment:
| Q |
121 |
aatgtatttcgaaaatgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggccttt |
200 |
Q |
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||||||||| ||| |||||||||||||| |||| |||||||||||||||||| ||||||||| |||||| |||||||| |
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| T |
9166206 |
aatgtattttaaaattgaaatgcataattttccaagttttcttagtttatatactgatttatagtactatattggccttt |
9166127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 9239060 - 9239139
Alignment:
| Q |
193 |
tggcctttgaacatgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatat |
272 |
Q |
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| T |
9239060 |
tggcctttgataatgatgttgttgtaatacattgagtttcttttcagtttaagcatattctttgggaatgtcccccatat |
9239139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 9133493 - 9133389
Alignment:
| Q |
136 |
tgaaatgcataattctccatgttttcttagtttatatattgatttatattactatgctggcctttgaacatgatcttgttgtaatacattaattttcttt |
235 |
Q |
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||||||||| |||| | || ||||| | ||||||| || ||||||||||||||| |||| |||||| ||||||||| ||||||| ||||||||| |
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| T |
9133493 |
tgaaatgcacaatttttcaagttttatgagtttatgtactgatttatattactaaactggtctttgataatgatcttg-----atacattgattttcttt |
9133399 |
T |
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| Q |
236 |
tctatttaag |
245 |
Q |
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|| ||||||| |
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| T |
9133398 |
tcaatttaag |
9133389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 294
Target Start/End: Original strand, 9180829 - 9180918
Alignment:
| Q |
205 |
atgatcttgttgtaatacattaattttcttttctatttaagcaagttatttgggaatgtcacccatataagctgattgaagttgatagat |
294 |
Q |
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||||| |||||||||| |||| | |||||||| |||||||| ||| ||||||||| || ||||||||| | || | |||||||||||| |
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| T |
9180829 |
atgatgttgttgtaatccattgactttcttttgggtttaagcatgttctttgggaatatctcccatataatccgactaaagttgatagat |
9180918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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