View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_68 (Length: 294)
Name: NF19193_low_68
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6472954 - 6472677
Alignment:
| Q |
1 |
ataaaggataagtaagtagtattttctatgtttgccgcaagttg--atcaacacttttaagtttatactaacaaaatttcactgaacttttcaattaatt |
98 |
Q |
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| T |
6472954 |
ataaaggataagtaagtagtattttctatgtttgccgcaagttgtgatcaacacttttaagtttatactaacaaaatttcaatgaacttttcaattaatt |
6472855 |
T |
|
| Q |
99 |
tttggttcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcaagtgataatttggaatttctattctctggtcttctaggtcaca |
198 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
6472854 |
tttggctcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcatgtgatgatttggaatttctattctctggtcttttaggtcaca |
6472755 |
T |
|
| Q |
199 |
atatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataaaactgaaactttacccggtgatat |
276 |
Q |
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| T |
6472754 |
atatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataagactgaaactttaactggtgatat |
6472677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 267
Target Start/End: Original strand, 13608867 - 13609038
Alignment:
| Q |
96 |
atttttggttcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcaagtgataatttggaatttctattctctggtcttctaggtc |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||| |||| |||||| ||| ||||| ||||||||||||||| ||||||||||||||| | |
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| T |
13608867 |
atttttggttcttggattgttttatcaattaatctttgttgtttttgtttgtggttgtcatgtgatgatttggaatttctatcctctggtcttctaggcc |
13608966 |
T |
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| Q |
196 |
acaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattgggaaataaaactgaaactttacc |
267 |
Q |
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| T |
13608967 |
agaatatgcagagattggaaaaattattaaaaagttaacatgcttattgggaaacaaaacttcaactttacc |
13609038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 13608697 - 13608756
Alignment:
| Q |
4 |
aaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaagttta |
63 |
Q |
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|||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||| |
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| T |
13608697 |
aaggataagtaagtagtattttctctgtttgccacaagctgatcaacacttttaagttta |
13608756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 244
Target Start/End: Original strand, 31244823 - 31244964
Alignment:
| Q |
94 |
taatttttggttcttgaattgttttatcaattaatctttgttatttatgttcgtggttttcaagtgataatttggaatttctattctctggtcttctagg |
193 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| | |||| | ||||| |||||| |||||||| |||||||||| |||| |
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| T |
31244823 |
taatttttggttcttgaattgttttatcaattaatttttgttt---------ggggttgttgtgtgatgatttggtatttctatcctctggtcttttagg |
31244913 |
T |
|
| Q |
194 |
tcacaatatgcggagattgaaaaaattattaaaaaggtaagaagcttattg |
244 |
Q |
| |
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|||||||||| ||||||| ||||||||||||| |||||| | |||||||| |
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| T |
31244914 |
ccacaatatgcagagattggaaaaattattaaagaggtaacatgcttattg |
31244964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17599662 - 17599599
Alignment:
| Q |
1 |
ataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaagtttat |
64 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| || |||| | |||||||||||||||||||| |
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| T |
17599662 |
ataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacacttttaagtttat |
17599599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14724188 - 14724251
Alignment:
| Q |
1 |
ataaaggataagtaagtagtattttctatgtttgccgcaagttgatcaacacttttaagtttat |
64 |
Q |
| |
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||||||||| ||||||| |||||||||||||| || |||| | |||||| ||||||||||||| |
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| T |
14724188 |
ataaaggatcagtaagttgtattttctatgttagcaacaagataatcaacgcttttaagtttat |
14724251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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