View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_69 (Length: 288)
Name: NF19193_low_69
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_69 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 21522131 - 21521878
Alignment:
| Q |
20 |
atccatgttgtgctcatagacttgatgattgatataaccctcaaaacaacccataaatttgaatgaccgcatatatggagcggatatctgaacttttaaa |
119 |
Q |
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| T |
21522131 |
atccatgttgtgctcatagacttgatgattgatataaccctcaaaacaacccataaatttaaatgaccgcatatacggagcggatatctgaacttttaaa |
21522032 |
T |
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| Q |
120 |
tgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcga |
219 |
Q |
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| T |
21522031 |
tgtttaagatccgcaaagtgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcga |
21521932 |
T |
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| Q |
220 |
tgactaaagtactaagcttcttacattttaagaaaggcgtagcataatctttgc |
273 |
Q |
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| T |
21521931 |
tgactaaagtactaagcttcttacattttaagaaaggcgtagcataatctttgc |
21521878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 272
Target Start/End: Complemental strand, 21537840 - 21537600
Alignment:
| Q |
20 |
atccatgttgtgctcatagacttgatgat---tgatataaccctcaaaacaacccataaatttgaatgaccgcatatatggagcggatatctgaactttt |
116 |
Q |
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| T |
21537840 |
atccatgttgtgctcaaagacttgatgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaactctt |
21537741 |
T |
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| Q |
117 |
aaatgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgt |
216 |
Q |
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| T |
21537740 |
gaatgtt---------------gatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgt |
21537656 |
T |
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| Q |
217 |
cgatgactaaagtactaagcttcttacattttaagaaaggcgtagcataatctttg |
272 |
Q |
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| T |
21537655 |
cgacgactaaagtactaagcttcttacattttaagaaaggcatagcataatctttg |
21537600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 263
Target Start/End: Original strand, 20426288 - 20426448
Alignment:
| Q |
103 |
atatctgaacttttaaatgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccaat |
202 |
Q |
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| T |
20426288 |
atatctgaagttttaaatgtttacaatcaacaaagtcatatctaatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgat |
20426387 |
T |
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| Q |
203 |
tactttgcaatcgtcgatgactaaagtactaagcttcttacattttaagaaaggcgtagca |
263 |
Q |
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| T |
20426388 |
taatttgaaattctcaatgaataaagtactaaacttcttacattttaagaaaggcttagca |
20426448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 263
Target Start/End: Complemental strand, 20427758 - 20427591
Alignment:
| Q |
95 |
tggagcggatatctgaacttttaaatgtttaagatccgcaaagtgatacatgattgttagactagaaagtgtatcaccagatataacaagtattttgtca |
194 |
Q |
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|||||| |||||||||||||||||||||||| ||| |||| ||| | || |||||||| |||||| ||| | || ||||| || |||| |||| |
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| T |
20427758 |
tggagcagatatctgaacttttaaatgtttacaatcaacaaaaccatatctaatagttagacttgaaagtctattagcatatatacagagaattt-gtca |
20427660 |
T |
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| Q |
195 |
tctccaattactttgcaatcgtcgatgactaaagtactaagcttcttacattttaagaaaggcgtagca |
263 |
Q |
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| T |
20427659 |
tctttgattaatttgaaattgtcaatgaataaagtattaagcttcttacatttcaagaaaggcttagca |
20427591 |
T |
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