View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_74 (Length: 276)
Name: NF19193_low_74
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_74 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 13079551 - 13079408
Alignment:
| Q |
1 |
atacaaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaag |
100 |
Q |
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| T |
13079551 |
atacaaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaag |
13079452 |
T |
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| Q |
101 |
attttccaatgaaaatgttagactcacaaggtgatacaacagag |
144 |
Q |
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| T |
13079451 |
attttccaatgaaaatgttagactcacaaggtgatacaacagag |
13079408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 14 - 141
Target Start/End: Complemental strand, 13075334 - 13075207
Alignment:
| Q |
14 |
tagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagattttccaatgaa |
113 |
Q |
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| T |
13075334 |
tagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagattttccaatgaa |
13075235 |
T |
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| Q |
114 |
aatgttagactcacaaggtgatacaaca |
141 |
Q |
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| T |
13075234 |
aatgttagactcataaggtgatacaaca |
13075207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 13079349 - 13079293
Alignment:
| Q |
203 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaag |
259 |
Q |
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| T |
13079349 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagagtgcaatgaagattaaag |
13079293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 13075145 - 13075089
Alignment:
| Q |
203 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaag |
259 |
Q |
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| T |
13075145 |
ttgtaccatttgtgaagggagaaatttaagaacctaagatttcaatgaagattaaag |
13075089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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