View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_75 (Length: 275)
Name: NF19193_low_75
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_75 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 13700159 - 13700342
Alignment:
| Q |
19 |
agatgtaccaaagagattctggtatgaagctagtctgtgggccattcatatattgaataaaagtctctatctatctgtgaaagatacgacatctgaggaa |
118 |
Q |
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| T |
13700159 |
agatgtaccaaagagattctagtatgaagctagtctgtgggccattcatatattgaataaaagtctctatctatctgtgaaagatacgacatctgaggaa |
13700258 |
T |
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| Q |
119 |
agttggagtgatttgaagtttattgtctattagtttagagtcttaggttgaatagcagatgcacatgtacctcatgataataga |
202 |
Q |
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| T |
13700259 |
agttggagtgatttgaagtttattgtctattagtttagagtcttaggttgaatagcagatgcatatgtacattatgataataga |
13700342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 13706171 - 13706351
Alignment:
| Q |
95 |
gtgaaagatacgacatctgaggaaagttggagtgatttgaagtttattgtctattagtttagagtcttaggttgaatagcagatgcacatgtacctcatg |
194 |
Q |
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| T |
13706171 |
gtgaaacatacgacatctgaggaaacttggagtgatttgaagtctattgtctattaatttagagtctttggttgaatagcagatgcatatgtacctcatg |
13706270 |
T |
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| Q |
195 |
ataatagaaagaagcttgatgcaaaaggtgtcaaatgtgttcattttgggattataaattaatataaaggttacaaggttc |
275 |
Q |
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| T |
13706271 |
ataatagaaagaagcttgatgcaaaaggtgtcaaatgtgttcattttgggattataaattaatataaaggttacaaggttc |
13706351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 13713662 - 13713842
Alignment:
| Q |
95 |
gtgaaagatacgacatctgaggaaagttggagtgatttgaagtttattgtctattagtttagagtcttaggttgaatagcagatgcacatgtacctcatg |
194 |
Q |
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| T |
13713662 |
gtgaaacatacgacatctgaggaaacttggagtgatttgaagtctattgtctattaatttagagtctttggttgaatagcagatgcatatgtacctcatg |
13713761 |
T |
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| Q |
195 |
ataatagaaagaagcttgatgcaaaaggtgtcaaatgtgttcattttgggattataaattaatataaaggttacaaggttc |
275 |
Q |
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| T |
13713762 |
ataatagaaagaagcttgatgcaaaaggtgtcaaatgtgttcattttgggattataaattaatataaaggttacaaggttc |
13713842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 24657830 - 24657782
Alignment:
| Q |
200 |
agaaagaagcttgatgcaaaaggtgtcaaatgtgttcattttgggatta |
248 |
Q |
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| T |
24657830 |
agaaagaagcttgatccaaaaggtatcaattgtgttcatcttgggatta |
24657782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 17390149 - 17390290
Alignment:
| Q |
19 |
agatgtaccaaagagattctggtatgaagctagtctgtgggccattcatatattgaataaaagtctctatctatctgtgaaagatacgacatctgaggaa |
118 |
Q |
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| T |
17390149 |
agatgtaccaaagagtttctggtatgaagcaagtttgtggcctattcatgtattgaataaatgtttct--ctatttttcaaagatacgacatctgaggaa |
17390246 |
T |
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| Q |
119 |
agttggagtgatttgaagtttattgtctattagtttagagtctt |
162 |
Q |
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| T |
17390247 |
acttggagtgatttgaagtctattgtctattagtttagagtctt |
17390290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 206 - 275
Target Start/End: Original strand, 17390324 - 17390393
Alignment:
| Q |
206 |
aagcttgatgcaaaaggtgtcaaatgtgttcattttgggattataaattaatataaaggttacaaggttc |
275 |
Q |
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| T |
17390324 |
aagcttgatgcaaaaggtgtcaaatgtgttcattttgggaatataaattaatataaaggttacaaggttc |
17390393 |
T |
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