View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_81 (Length: 255)
Name: NF19193_low_81
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_81 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 238
Target Start/End: Complemental strand, 54791988 - 54791797
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctataa |
146 |
Q |
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| T |
54791988 |
gtacctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctataa |
54791889 |
T |
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| Q |
147 |
gnnnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataag |
238 |
Q |
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| T |
54791888 |
gtttttttctactcttctgcttcaatgatcatacaagaatagaaaaaaatacatggccaaacatgaagcacacagcctttacatacaataag |
54791797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 54777160 - 54777349
Alignment:
| Q |
51 |
ctcctcacgggctttacgctgcatactccttgactctaataatnnnnnnnnnnnnnnnnngtgagacagacatttttgtagcattaaaacctat--aagn |
148 |
Q |
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| T |
54777160 |
ctcctcacgggctttacgctgcatactccttgactctaataataaaataaaaataaaaaagtgagacagacatttttgtagcattaaaacctatgcaagt |
54777259 |
T |
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| Q |
149 |
nnnnnnctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataag |
238 |
Q |
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| T |
54777260 |
ttttttctactcttctgcctcaatgatcgtacaagaatagaaaaacatacatggccaaacatgaagcacacagcctttacatacaataag |
54777349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 52284538 - 52284455
Alignment:
| Q |
155 |
ctactcttctgcttcaatgatcgtacaagaatagnnnnnnntacatggccaaacatgaagcacacagcctttacatacaataag |
238 |
Q |
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| T |
52284538 |
ctactctactgcttcaatgaacgtacaagaatataaaaacatacatggccaaacttgaagcacacggcctttacatacaataag |
52284455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 799836 - 799796
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactct |
87 |
Q |
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| T |
799836 |
gtacctcatcacgagctttacgctgcatgctccttgactct |
799796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 52284655 - 52284615
Alignment:
| Q |
47 |
gtacctcctcacgggctttacgctgcatactccttgactct |
87 |
Q |
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| T |
52284655 |
gtacctcttcacgagctttacgctgcatgctccttgactct |
52284615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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