View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19193_low_9 (Length: 562)
Name: NF19193_low_9
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 546
Target Start/End: Original strand, 15171890 - 15172429
Alignment:
| Q |
12 |
atgaacgctttggtaagttcaaaaacatggtattgaattgtttaattcctgcaggattaggatatcagagacatgtttgtt--tataactcttgttgttt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||||||| ||| | |||| |||||||||||| | ||||| | | || | ||||||||| |
|
|
| T |
15171890 |
atgaacgctttggtaagttcagaaacatggtattcaattgtttagttctggtaggactaggatatcagaaaactgtttataactctagatattgttgttt |
15171989 |
T |
|
| Q |
110 |
ttgt---ctgtcttcaaaaggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggc |
206 |
Q |
| |
|
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15171990 |
ttgttgtctatcctcaaaaggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcattacatcaacaatagcaaggc |
15172089 |
T |
|
| Q |
207 |
tcttagagaagccatgtgcttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgat |
306 |
Q |
| |
|
||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172090 |
tctaagagaggccatgtgcttccttatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgat |
15172189 |
T |
|
| Q |
307 |
cgatatgctaatcgcaacactgtcttctttgatgtaagtatcattctccttaacttcaaatcaacaaatttatgcaaatttcacttagaaaaatgaccct |
406 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||| || ||| |||||||||||| |
|
|
| T |
15172190 |
agatatgctaatcgcaacactgttttctttgatgtaagtatcattctccttaactgcaactcaacaaattgatgcaaattgcagttaaaaaaatgaccct |
15172289 |
T |
|
| Q |
407 |
taaactttgtttttatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgt |
506 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172290 |
gaaatgttgcttttatcatagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgt |
15172389 |
T |
|
| Q |
507 |
atggatatgatccaccagtttccgagaaaaggccaaagat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15172390 |
atggatatgatccaccagtttccgagaaaaggccaaagat |
15172429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 5127722 - 5127639
Alignment:
| Q |
262 |
tatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctttgatgtaagt |
345 |
Q |
| |
|
||||| ||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||| |
|
|
| T |
5127722 |
tatgtgcaattcccccaaagatttgatggtattgatcgtagtgatcgatatgccaatcgcaacacagttttcttcgatgtaagt |
5127639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 136 - 345
Target Start/End: Complemental strand, 54383075 - 54382866
Alignment:
| Q |
136 |
tctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtgcttcctaatgg |
235 |
Q |
| |
|
||||| |||||||||||||| || || ||| |||| | ||||||||||| || ||||| || ||||||||| | |||| |||||||||||| | |||| |
|
|
| T |
54383075 |
tctgcagtgcttacaaatgctccttttatgctgaacttggattgtgatcattatatcaataacagcaaggctgtccgagaggccatgtgcttcttgatgg |
54382976 |
T |
|
| Q |
236 |
atcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctt |
335 |
Q |
| |
|
| || ||| |||||||||| ||||||||||||| |||||||||||||| ||||| |||||| || ||||||||||||||| | ||||| || ||||| |
|
|
| T |
54382975 |
acccccaaacagggaagaaagtctgctatgtccagtttcctcaaagattcgatggcattgatgcgcatgatcgatatgctaataggaacacagttttctt |
54382876 |
T |
|
| Q |
336 |
tgatgtaagt |
345 |
Q |
| |
|
|||||||||| |
|
|
| T |
54382875 |
tgatgtaagt |
54382866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 29918015 - 29917930
Alignment:
| Q |
256 |
ctctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctttgatgt |
341 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| |||||||||| ||| |||||||||||| |||||| |||||||||||||| |
|
|
| T |
29918015 |
ctctgctatgtccaattccctcaaaggtttgagggtattgatccctctgatagatatgctaatcacaacaccgtcttctttgatgt |
29917930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 120 - 344
Target Start/End: Original strand, 30258190 - 30258414
Alignment:
| Q |
120 |
tcaaaaggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagcc |
219 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||| || |||||||||| ||||||||||| |||||||| ||||||||||||||||| || | |
|
|
| T |
30258190 |
tcaaaagcttcgagtttctgcggtgcttagcaatgcaccttttgtgttgaatctggattgtgatcaatacatcaataatagcaaggctcttagggagtct |
30258289 |
T |
|
| Q |
220 |
atgtgcttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatc |
319 |
Q |
| |
|
||||||||||||||||| |||| ||| || ||||| | |||||||||||||| | ||| |||||||| ||||| | | ||| ||||||| || | |
|
|
| T |
30258290 |
atgtgcttcctaatggaccctctacttggaaagaagaccgcttatgtccaatttccacgaaggtttgatggcattgacgataatgatagatatgccaacc |
30258389 |
T |
|
| Q |
320 |
gcaacactgtcttctttgatgtaag |
344 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
30258390 |
acaacactgtattctttgatgtaag |
30258414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 44376838 - 44376702
Alignment:
| Q |
175 |
gattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtgcttcctaatggatcctcaactagggaagaaactctgctatgtccaatttc |
274 |
Q |
| |
|
|||||||| |||||||| ||||| || ||||| ||| | ||||||||||| ||| | ||||||||| | |||||| ||| | |||||||| ||||||| |
|
|
| T |
44376838 |
gattgtgaccactacataaacaacagtaaggcccttcgtgaagccatgtgtttcatgatggatcctacatcagggaaaaaaatatgctatgtgcaatttc |
44376739 |
T |
|
| Q |
275 |
ctcaaagatttgatggtattgatcgtcacgatcgata |
311 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
44376738 |
ctcaaagatttgatggaattgatcgtcatgatagata |
44376702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 523
Target Start/End: Original strand, 30258495 - 30258593
Alignment:
| Q |
425 |
tagatcaatatgaaagggcttgatggtattcaaggtccagtgtatgtcggtaccggaactgtgttcaacagacaagcattgtatggatatgatccacca |
523 |
Q |
| |
|
|||||||| |||||| | |||||||| |||||||||||||||||||| ||||| ||| |||||||||||| || ||||| ||||| ||| | |||||| |
|
|
| T |
30258495 |
tagatcaacatgaaatgccttgatggaattcaaggtccagtgtatgttggtactggatgtgtgttcaacaggcaggcattatatggctataagccacca |
30258593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 344
Target Start/End: Complemental strand, 13825518 - 13825299
Alignment:
| Q |
125 |
aggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtg |
224 |
Q |
| |
|
|||||||||| |||||||| ||||| |||| ||| ||| | |||||||| ||||||||||||||||| ||||| |||||||| | || || || ||||| |
|
|
| T |
13825518 |
aggttcgagtatctgctgtccttactaatggacctttcttattgaatcttgattgtgatcactacataaacaacagcaaggccttgagggaggctatgtg |
13825419 |
T |
|
| Q |
225 |
cttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaac |
324 |
Q |
| |
|
||| | ||||||||| | || || || | | ||||||||||| ||||| || || ||||||||||||||| | ||||||||||||| ||||| || |
|
|
| T |
13825418 |
ctttatgatggatcctaacctcggtaaacatgtttgctatgtccagtttccacagaggtttgatggtattgataggaacgatcgatatgccaatcgtaat |
13825319 |
T |
|
| Q |
325 |
actgtcttctttgatgtaag |
344 |
Q |
| |
|
||||| |||||||| ||||| |
|
|
| T |
13825318 |
actgttttctttgacgtaag |
13825299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 297
Target Start/End: Complemental strand, 38720142 - 38720023
Alignment:
| Q |
178 |
tgtgatcactacatcaacaatagcaaggctcttagagaagccatgtgcttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctc |
277 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |||||||| || | ||||| |||||||| || ||||| |||||||||| |||||||| | |
|
|
| T |
38720142 |
tgtgatcattacatcaataatagcaaggctcttagagaggccatgtgttttatgatggaccctcaacttggcaagaagatctgctatgtacaatttccac |
38720043 |
T |
|
| Q |
278 |
aaagatttgatggtattgat |
297 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
38720042 |
aaagatttgatggaattgat |
38720023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 262 - 345
Target Start/End: Complemental strand, 35925921 - 35925838
Alignment:
| Q |
262 |
tatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctttgatgtaagt |
345 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| ||||||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
35925921 |
tatgtacaattcccccaaagatttgatggtattgatcgcagtgatcgatatgccaaccgcaatacagttttctttgatgtaagt |
35925838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 348
Target Start/End: Complemental strand, 43435550 - 43435327
Alignment:
| Q |
125 |
aggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtg |
224 |
Q |
| |
|
|||||||||| |||| ||| ||||| |||| ||| ||| | |||||||| ||||||||||||||||| ||||| |||||||| | || ||||| ||||| |
|
|
| T |
43435550 |
aggttcgagtatctggtgttcttactaatggacctttcttattgaatcttgattgtgatcactacataaacaacagcaaggccttgagggaagctatgtg |
43435451 |
T |
|
| Q |
225 |
cttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaac |
324 |
Q |
| |
|
||| | ||||||||| | || || || | | ||||||||||| ||||| || || ||||||||||||||| | |||| |||||||| ||||| || |
|
|
| T |
43435450 |
ctttatgatggatcctaacctcggtaaatatgtttgctatgtccagtttccacagaggtttgatggtattgataggaacgaccgatatgccaatcgtaat |
43435351 |
T |
|
| Q |
325 |
actgtcttctttgatgtaagtatc |
348 |
Q |
| |
|
||||| |||||||| ||||||||| |
|
|
| T |
43435350 |
actgttttctttgaggtaagtatc |
43435327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 47919215 - 47919300
Alignment:
| Q |
256 |
ctctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctttgatgt |
341 |
Q |
| |
|
||||||||||||||||| || || || ||||| |||||||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
47919215 |
ctctgctatgtccaattcccccagaggtttgagggtattgatccctctgatagatatgctaatcacaacactgtcttctttgatgt |
47919300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 348
Target Start/End: Original strand, 9479183 - 9479406
Alignment:
| Q |
125 |
aggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtg |
224 |
Q |
| |
|
||||||| || || ||||||||||| |||| ||| ||| | |||||||| ||||||||||| ||||| ||||| ||||| || | || ||||| ||||| |
|
|
| T |
9479183 |
aggttcgtgtatcagctgtgcttactaatggacctttcttattgaatcttgattgtgatcattacataaacaacagcaaagccttgagggaagctatgtg |
9479282 |
T |
|
| Q |
225 |
cttcctaatggatcctcaactagggaagaaactctgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaac |
324 |
Q |
| |
|
|| | |||||||| | || || || || | |||||||| |||||||| || || ||||||||||||||| | ||||||||||||| || || || |
|
|
| T |
9479283 |
ttttatgatggatcccaaccttggaaaaaatgtttgctatgttcaatttccacagaggtttgatggtattgataggaacgatcgatatgccaaccgtaat |
9479382 |
T |
|
| Q |
325 |
actgtcttctttgatgtaagtatc |
348 |
Q |
| |
|
||||| |||||||||||||||||| |
|
|
| T |
9479383 |
actgttttctttgatgtaagtatc |
9479406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 342
Target Start/End: Complemental strand, 49591132 - 49591049
Alignment:
| Q |
259 |
tgctatgtccaatttcctcaaagatttgatggtattgatcgtcacgatcgatatgctaatcgcaacactgtcttctttgatgta |
342 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| |||||| |||||||||||||| |||||||| | ||||||||| |||||| |
|
|
| T |
49591132 |
tgctatgttcaatttccgcagagatttgatggcattgatttgcacgatcgatatgccaatcgcaatattgtcttcttcgatgta |
49591049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 1176301 - 1176187
Alignment:
| Q |
125 |
aggttcgagtttctgctgtgcttacaaatgcaccattcatgttgaatctcgattgtgatcactacatcaacaatagcaaggctcttagagaagccatgtg |
224 |
Q |
| |
|
||||| |||| ||| |||||||| | |||||||| || ||||||| |||| | | |||| ||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
1176301 |
aggttagagtgtcttctgtgctttccaatgcaccttttgtgttgaacttcgactataatcattacatcaacaatagcaaggctattagagaagcaatgtg |
1176202 |
T |
|
| Q |
225 |
cttcctaatggatcc |
239 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
1176201 |
tttcatgatggatcc |
1176187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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