View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19193_low_92 (Length: 238)

Name: NF19193_low_92
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19193_low_92
NF19193_low_92
[»] chr4 (3 HSPs)
chr4 (62-141)||(37790491-37790570)
chr4 (155-224)||(37790361-37790430)
chr4 (1-50)||(37790594-37790643)
[»] chr8 (1 HSPs)
chr8 (90-126)||(24934289-24934325)


Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 37790570 - 37790491
Alignment:
Q  62 tacaaaaatattttttcatggactaatgaccaaaacttttgatatttgtaaatatcatttgcatattgaaacctctataa 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37790570 tacaaaaatattttttcatggactaatgaccaaaacttttgatatttgtaaatatcatttgcatattgaaacctctataa 37790491  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 37790430 - 37790361
Alignment:
Q  155 tatagcgacattaaatctcgcgaatttttctcgaaactgattctactattgctacatgttttgcctactg 224  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37790430 tatagcgacattaaatcgcgcgaatttttctcgaaactgattctactattgctacatgttttgcctactg 37790361  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37790643 - 37790594
Alignment:
Q  1 tgaggaacaaaaataaaaagttgtatatttgcaaggactaataaggatat 50  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37790643 tgaggaacaaaaataaaaagttgtatatttgcaaggactaataaggatat 37790594  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 24934325 - 24934289
Alignment:
Q  90 accaaaacttttgatatttgtaaatatcatttgcata 126  Q
    |||||||||||||||||||||||  ||||||||||||    
T  24934325 accaaaacttttgatatttgtaaggatcatttgcata 24934289  T

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