View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_94 (Length: 232)
Name: NF19193_low_94
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_94 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 217
Target Start/End: Original strand, 27598050 - 27598246
Alignment:
| Q |
21 |
tcaaaaacacattaagtggctgtagttaaaattatcnnnnnnntaacaaatgtagtattgttgcagctgcagcacatattagtatagggccaagtctatg |
120 |
Q |
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| T |
27598050 |
tcaaaaacacattaagtggttgtagttaaaattatcaaaactataacaaatgtactattgttgcagctgcagcacatattagtatagggccaagtctatg |
27598149 |
T |
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| Q |
121 |
gtgcggggacttaagtcttgcaccatgcacaacgcgggttttaccattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttat |
217 |
Q |
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| T |
27598150 |
gtgcggggacttaagtcttgcaccatgcacaacgtggtttttaccattggatcaataaggctcagtattaaattaaatgaaatatggtgagatttat |
27598246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 29264488 - 29264644
Alignment:
| Q |
64 |
taacaaatgtagtattgttgcagctgcagcacatattagtatagggccaagtctatggtgcg---gggacttaagtcttgcaccatgcacaacgcgggtt |
160 |
Q |
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| T |
29264488 |
taacaaatgtagtattgctgcagttgcagcacatattagtatagggccaagtctatggtgcacacgggacttacgtcttgcaccatgcacaatgtggttt |
29264587 |
T |
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| Q |
161 |
ttaccattggatcaataaggatcggtattaaattaaatgaaatatggtgagatttat |
217 |
Q |
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| T |
29264588 |
ttaccactggatcaataaggctcaatattaaattaaattaaatatggtgagatttat |
29264644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 40210466 - 40210416
Alignment:
| Q |
166 |
attggatcaataaggatcggtattaaattaaatgaaatatggtgagattta |
216 |
Q |
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| T |
40210466 |
attggatcaataagtctcgttattaaattaaatgaaatatgatgagattta |
40210416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 13774512 - 13774484
Alignment:
| Q |
186 |
tattaaattaaatgaaatatggtgagatt |
214 |
Q |
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| T |
13774512 |
tattaaattaaatgaaatatggtgagatt |
13774484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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