View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_95 (Length: 227)
Name: NF19193_low_95
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_95 |
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| [»] scaffold0201 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 23483473 - 23483694
Alignment:
| Q |
1 |
taaaacgcatacaagcctggtatcatccttgactttataatgttgcgtgcattttcccaactactcatcaacatttgtagtggccatatatcattgtttt |
100 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23483473 |
taaaacgcatacaagtctgggatcatccttgactttataatgttgcgtgcattttaccaactacttatcaacatttgtagtggccatatatcattgtttt |
23483572 |
T |
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| Q |
101 |
aaacctgttggttacacctaaacagcaatggagctaatcaatggaattttttgacaataataaaaccataactacatgactgcctacttggaagcttgag |
200 |
Q |
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| T |
23483573 |
aaacctgttgattacacctaagcagcaatggagctaattaatggatttttttgacaataatagaaccataactacatgactgcctacttggaagcttgag |
23483672 |
T |
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| Q |
201 |
aatgatggtgtttatatagtta |
222 |
Q |
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|||||||||||||||| ||||| |
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| T |
23483673 |
aatgatggtgtttatacagtta |
23483694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 19561 - 19777
Alignment:
| Q |
1 |
taaaacgcatacaagcctggtatcatccttgactttataatgttgcgtgcattttcccaactactcatcaacatttgtagtggccatatatcattgtttt |
100 |
Q |
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||||||||||||||| || | |||||||||| ||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
19561 |
taaaacgcatacaagtctaggatcatccttgcctttataattttgcatgcattttaccaactacttatcaacatttgtagtggccatatatcattgttct |
19660 |
T |
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| Q |
101 |
aaacctgttggttacacctaaacagcaatggagctaatcaatgga-attttttgacaataataaaaccataactacatgactgcctacttggaagcttga |
199 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
19661 |
aaacttgttggttacacctaagcagcaatggagctaattaatggattttttttgacaataatagaaccataactacatgactgcccacttggaagcttga |
19760 |
T |
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| Q |
200 |
gaatgatggtgtttata |
216 |
Q |
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| T |
19761 |
gaatgatggtgtttata |
19777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 33337228 - 33337166
Alignment:
| Q |
37 |
ataatgttgcgtgcattttcccaactactcatcaacatttgtagtggccatatatcattgttt |
99 |
Q |
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| T |
33337228 |
ataatgttgcgcgcactttaccaactactcatcaacacttgaagtggacatatatcactgttt |
33337166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 26007312 - 26007255
Alignment:
| Q |
61 |
ctactcatcaacatttgtagtggccatatatcattgttttaaacctgttggttacacc |
118 |
Q |
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|||||||||| |||||| ||||||||| ||||||||||| ||| ||||||||||||| |
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| T |
26007312 |
ctactcatcatcatttggagtggccatctatcattgtttctaacttgttggttacacc |
26007255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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