View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19193_low_96 (Length: 227)
Name: NF19193_low_96
Description: NF19193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19193_low_96 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 33522331 - 33522118
Alignment:
| Q |
14 |
atcaattgtgaaagccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaaggagtttttcatgggttgatatgctt |
113 |
Q |
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| T |
33522331 |
atcaattgtgaaagccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaaggagtttttcatgggttgatatgctt |
33522232 |
T |
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| Q |
114 |
cttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaagacttggggattgcgcgacaattta |
213 |
Q |
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| T |
33522231 |
cttgttcaatcaattgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaagacttggggattgcgcgacaattta |
33522132 |
T |
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| Q |
214 |
taatgcaaaagctc |
227 |
Q |
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| T |
33522131 |
taatgcaaaagctc |
33522118 |
T |
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Back To:
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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 55448595 - 55448392
Alignment:
| Q |
24 |
aaagccaaaccaactcatgttgatgaacaaagcaaatgtttcgtcattttttctccggaaacaaggagtttttcatgggttgatatgcttcttgttcaat |
123 |
Q |
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| T |
55448595 |
aaagccaaaccaactaatgataatgagcagaacaaatatattgtaattttttcgccagaaacaaggaactattcatgggttgatatgcttcttgttaaat |
55448496 |
T |
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| Q |
124 |
caattgataagtttcctcaacctatagcatataaaacttatcaagaaggattgcaaatggtacaagacttggggattgcgcgacaatttataatgcaaaa |
223 |
Q |
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| T |
55448495 |
caattcatgagtttcctcaaccaatagcatatgaaacttatcatgaaggattgaaaatggtacaagacttgacaattgcacgacaatttataatgcaaaa |
55448396 |
T |
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| Q |
224 |
gctc |
227 |
Q |
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|||| |
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| T |
55448395 |
gctc |
55448392 |
T |
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