View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19194_high_10 (Length: 316)

Name: NF19194_high_10
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19194_high_10
NF19194_high_10
[»] chr7 (5 HSPs)
chr7 (123-313)||(8429969-8430159)
chr7 (123-313)||(8449252-8449442)
chr7 (1-77)||(8429847-8429923)
chr7 (1-77)||(8449488-8449564)
chr7 (171-274)||(25973850-25973954)
[»] scaffold0141 (2 HSPs)
scaffold0141 (123-313)||(7389-7579)
scaffold0141 (1-77)||(7625-7701)
[»] chr2 (2 HSPs)
chr2 (123-265)||(4238600-4238742)
chr2 (9-72)||(4238913-4238976)
[»] chr1 (1 HSPs)
chr1 (5-57)||(44272572-44272624)
[»] chr6 (2 HSPs)
chr6 (151-260)||(14973383-14973490)
chr6 (13-63)||(33894486-33894536)
[»] chr4 (1 HSPs)
chr4 (153-234)||(8564480-8564561)
[»] scaffold0638 (1 HSPs)
scaffold0638 (161-265)||(7948-8051)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 5e-99; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 123 - 313
Target Start/End: Original strand, 8429969 - 8430159
Alignment:
Q  123 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8429969 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac 8430068  T
Q  223 attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttcgacat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8430069 attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat 8430159  T

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Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 123 - 313
Target Start/End: Complemental strand, 8449442 - 8449252
Alignment:
Q  123 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8449442 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac 8449343  T
Q  223 attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttcgacat 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  8449342 attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat 8449252  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8429847 - 8429923
Alignment:
Q  1 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8429847 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat 8429923  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8449564 - 8449488
Alignment:
Q  1 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  8449564 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagccagaactattgtaacacaat 8449488  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 274
Target Start/End: Complemental strand, 25973954 - 25973850
Alignment:
Q  171 aataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatct-ttgctttcatggagtttgagattacct-tta 268  Q
    ||||||||| || | |||||||| || |||| | ||||||| |||| ||||||||||||||||| | | |||||||||||| | |||||||| ||| |||    
T  25973954 aataataaattttccttttctcattttcttt-tcttcttcatagctttgcacattgcaagcttattttcttgctttcatggggattgagattgcctctta 25973856  T
Q  269 acaata 274  Q
    ||||||    
T  25973855 acaata 25973850  T

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Target: scaffold0141 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 123 - 313
Target Start/End: Complemental strand, 7579 - 7389
Alignment:
Q  123 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7579 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaatgcctttttctcacttcctttgttttcttcaaagctatgcac 7480  T
Q  223 attgcaagcttaatctttgctttcatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatattcttcgacat 313  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  7479 attgcaagcttaatctttgctttaatggagtttgagattacctttaacaatactgaaaatagtttaatatcacaatcatatttttggacat 7389  T

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Target: scaffold0141; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 7701 - 7625
Alignment:
Q  1 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7701 tagcttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaacacaat 7625  T

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Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 123 - 265
Target Start/End: Complemental strand, 4238742 - 4238600
Alignment:
Q  123 cactctatgtaaagctatagtgcttcactgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcac 222  Q
    |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4238742 cactctatataaagctatagtgcttcattgtaatacttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaatctatgcac 4238643  T
Q  223 attgcaagcttaatctttgctttcatggagtttgagattacct 265  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  4238642 attgcaagcttaacctttgctttcatggagtttgagattacct 4238600  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 4238976 - 4238913
Alignment:
Q  9 gatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaactattgtaac 72  Q
    ||||||| |||||||||||||||||| |||| ||||||||| ||||||| |||||  |||||||    
T  4238976 gatgcatatgttacttgtgtagcaagcaactatgtgaaactcaactagcttaaacggttgtaac 4238913  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 44272624 - 44272572
Alignment:
Q  5 ttgagatgcatttgttacttgtgtagcaagtaactgtgtgaaacttaactagc 57  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  44272624 ttgagatgtatatgttacttgtgtagcaagtaactgtgtgaaacttaactagc 44272572  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Original strand, 14973383 - 14973490
Alignment:
Q  151 tgtaattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatctttgctttcatgg 250  Q
    |||||| || |||||||| ||||| ||||||||| | |||| || | |||||| ||||||| ||||||| |  ||||||||||| | | | |||||||||    
T  14973383 tgtaatactcagattttgggaatagtaaaattccctcttcttacatactttgtcttcttcatagctatgta--ttgcaagcttattttctactttcatgg 14973480  T
Q  251 agtttgagat 260  Q
    ||||||||||    
T  14973481 agtttgagat 14973490  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Complemental strand, 33894536 - 33894486
Alignment:
Q  13 catttgttacttgtgtagcaagtaactgtgtgaaacttaactagcctaaac 63  Q
    ||||||||||||| ||||||||||||||| | |||||||||| ||||||||    
T  33894536 catttgttacttgggtagcaagtaactgtttaaaacttaacttgcctaaac 33894486  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 234
Target Start/End: Original strand, 8564480 - 8564561
Alignment:
Q  153 taattcttagattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagctta 234  Q
    |||| |||| |||||  ||||||| ||||||||| ||| ||||| |||||| ||||| ||| ||||||||||||||| ||||    
T  8564480 taatacttacattttctgaataatgaaattccttgttcacactttctttgtcttctttaaatctatgcacattgcaatctta 8564561  T

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Target: scaffold0638 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 265
Target Start/End: Complemental strand, 8051 - 7948
Alignment:
Q  161 agattttgagaataataaaattcctttttctcacttcctttgttttcttcaaagctatgcacattgcaagcttaatctttgctttcatggagtttgagat 260  Q
    |||||||| |||||||||| |||||| ||||||| | | |||| ||||| ||||| |||||||||| |||  || | ||  |||||||| ||||||||||    
T  8051 agattttgtgaataataaa-ttccttcttctcaccttccttgtcttctttaaagccatgcacattgtaagtctatttttcactttcatgaagtttgagat 7953  T
Q  261 tacct 265  Q
    |||||    
T  7952 tacct 7948  T

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