View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19194_high_12 (Length: 303)
Name: NF19194_high_12
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 7055591 - 7055877
Alignment:
| Q |
1 |
ttcacactccttaatctgttcatcactcaaaacatcaccgacacgattcttcaaattccgataataagtcactggaggaggagtcataaactcaaaacca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7055591 |
ttcacactccttaatctgttcatcactcaaaacatcaacgacacgattcttcaaattccgataataagtcactggaggaggagccataaactcaaaacca |
7055690 |
T |
|
| Q |
101 |
ccaacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7055691 |
ccaacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaat |
7055790 |
T |
|
| Q |
201 |
atgtttctatcggactcttgcgctttgttccgtaaatcggttcgcatatcggaagcaacacagtttcatcattgctcgctagtacta |
287 |
Q |
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| T |
7055791 |
atgtttctatcggactcttgcgctttgttccgtaaatgggttcgcatatcggaagcaacacagtttcatcattgctcgctagtacta |
7055877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 39641729 - 39642007
Alignment:
| Q |
1 |
ttcacactccttaatctgttcatcactcaaaacatcaccgacacgattcttcaaattccgataataagtcactggaggaggagtcataaactcaaaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||| ||||||| || |||||||||||||||| |
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| T |
39641729 |
ttcacactccttaatctgttcatcactcaaaacatcgccaacgcgattcttcaaattacgataataagtcaccggaggagaaggcataaactcaaaacca |
39641828 |
T |
|
| Q |
101 |
ccaacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaat |
200 |
Q |
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|||||||||||| |||| |||||||| || |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39641829 |
ccaacaccacttctctttctcatttccctcaatgtcttgaatatatcttcagacgctaaagccaaatgctgaaacccggcaccttcattgtgctccaaat |
39641928 |
T |
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| Q |
201 |
atgtttctatcggactcttgcgctttgttccgtaaatcggttcgcatatcggaagcaacacagtttcatcattgctcgc |
279 |
Q |
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| T |
39641929 |
acgtttctatcgtactcttgcgctttgttccgtaaacaggttcgcacaacggaagcaacaccgtttcatcattgttcgc |
39642007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 39680520 - 39680248
Alignment:
| Q |
1 |
ttcacactccttaatctgttcatcactcaaaacatcaccgacacgattcttcaaattccgataataagtcactggaggaggagtcataaactcaaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||| || |||||||||||| ||| |
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| T |
39680520 |
ttcacactccttaatctgttcatcactcaaaacatcgccaacgcgattcttcaaattacgataataagtcactggaggagaaggcataaactcaaaccca |
39680421 |
T |
|
| Q |
101 |
ccaacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaat |
200 |
Q |
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|||||||||||| |||| |||||||| || | |||||| |||||||| | ||| ||| ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
39680420 |
ccaacaccacttctctttctcatttccctcagtgtcctaaatatatccgctgacatcaacgccaaatgctgtaacccagcaccttcattgtgttccaaat |
39680321 |
T |
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| Q |
201 |
atgtttctatcggactcttgcgctttgttccgtaaatcggttcgcatatcggaagcaacacagtttcatcatt |
273 |
Q |
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| |||||||| ||||||| | |||||||||||||| ||||| ||||||||||| || ||||| ||||| |
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| T |
39680320 |
acgtttctatttgactctttctctttgttccgtaaacaggttcattcatcggaagcaaaaccgtttcttcatt |
39680248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 39637100 - 39637316
Alignment:
| Q |
1 |
ttcacactccttaatctgttcatcactcaaaacatcaccgacacgattcttcaaattccgataataagtcactggaggaggagtcataaactcaaaacca |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| || |||||||| ||||||||| ||||||||| || ||||||| || |||||||||||||||| |
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| T |
39637100 |
ttcacactccttaatctgttcatcattcaaaacatccccaacacgatttatcaaattcctataataagtaacaggaggagaaggcataaactcaaaacca |
39637199 |
T |
|
| Q |
101 |
ccaacaccacttttcttcctcatttctcttaatgtcctgaatatatcttcagacgccaaagccaaatgctgaaacccggcaccttcattgtgttccaaat |
200 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||| |||||||||| || ||| ||| |||| ||| || ||||| |||||||| |||||||||||| |
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| T |
39637200 |
ccaacaccacttttctttctcatttctctcaatgtcttgaatatatcctccgacatcaacgccacatgttgtaaccctgcaccttcgctgtgttccaaat |
39637299 |
T |
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| Q |
201 |
atgtttctatcggactc |
217 |
Q |
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| ||||||||||||||| |
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| T |
39637300 |
aagtttctatcggactc |
39637316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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