View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19194_high_13 (Length: 294)

Name: NF19194_high_13
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19194_high_13
NF19194_high_13
[»] chr2 (8 HSPs)
chr2 (1-258)||(2321650-2321920)
chr2 (129-258)||(2294335-2294464)
chr2 (155-224)||(2303977-2304046)
chr2 (20-109)||(2294512-2294601)
chr2 (39-109)||(2339306-2339375)
chr2 (72-109)||(2304241-2304278)
chr2 (37-109)||(2331412-2331484)
chr2 (126-231)||(2327562-2327664)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 2321920 - 2321650
Alignment:
Q  1 actttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2321920 actttgatattacaaaaacaagatcatattttttatacattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagat 2321821  T
Q  101 atataagaagtaagggatc--attgtat--------------tgtatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgt 184  Q
    ||||||||||||||| ||   | |||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2321820 atataagaagtaaggcatatgaatgtatgcataagggatcattgtatgaaacaaaatccgaccatatgagaaatccacatataatattcccctgttgtgt 2321721  T
Q  185 tatgacattctcaagcagagaatctagagtggttcacacaacaacattacatactccaaatcgttacacataac 258  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  2321720 tatgacattctcaagcagagaatctagagtggttcacac---aacattacatactccaaatcgttacacataac 2321650  T

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Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 2294464 - 2294335
Alignment:
Q  129 tatgaaacaaaatcccaccatatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacacaacaa 228  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2294464 tatgaaacaaaatcccaccatatgacaaatccacatataatactcccctgctgtgttatgacattctcaagcagagaatctagggtggttcacacaacaa 2294365  T
Q  229 cattacatactccaaatcgttacacataac 258  Q
    |||||||||||||| ||||||||| |||||    
T  2294364 cattacatactccacatcgttacatataac 2294335  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 224
Target Start/End: Complemental strand, 2304046 - 2303977
Alignment:
Q  155 aaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 224  Q
    |||||||||||||||||| |  || |||||||||||||||||||||||||||||||||||||||||||||    
T  2304046 aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacaca 2303977  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 2294601 - 2294512
Alignment:
Q  20 aagatcatattttttatacattgaaagtatcttgacttacaagaatgacagac-atgttttattttatacaagaaacaagatatataagaa 109  Q
    |||||||||| |||| |||| |||||||||||||||||||||||||||||| | | |||||  |||||||| |||||||||||||||||||    
T  2294601 aagatcatatatttt-tacaatgaaagtatcttgacttacaagaatgacaggcaaagtttttatttatacaggaaacaagatatataagaa 2294512  T

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Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 2339375 - 2339306
Alignment:
Q  39 attgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 109  Q
    ||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||| |||||||||||||    
T  2339375 attgaaagtatcttg-cttaccagaatgccaaacatgttttattttatacaagaaacgagatatataagaa 2339306  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 2304278 - 2304241
Alignment:
Q  72 catgttttattttatacaagaaacaagatatataagaa 109  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2304278 catgttttattttatacaagaaacaagatatataagaa 2304241  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 2331484 - 2331412
Alignment:
Q  37 acattgaaagtatcttgacttacaagaatgacagacatgttttattttatacaagaaacaagatatataagaa 109  Q
    |||||||| |||||||| ||| |||||| | ||  |||||||||||||||| |||||||||||||| ||||||    
T  2331484 acattgaatgtatcttggcttgcaagaaggtcatgcatgttttattttatataagaaacaagatatgtaagaa 2331412  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 2327664 - 2327562
Alignment:
Q  126 ttgtatgaaacaaaatcccacca-tatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagagaatctagagtggttcacaca 224  Q
    ||||||||| |||||||  |||| | ||| ||||| |||||||||||||| ||||   |||||||||||  |||| |||||||||||  |||||||||||    
T  2327664 ttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgt---gttatgacattgccaag-agagaatctaggatggttcacaca 2327569  T
Q  225 acaacat 231  Q
    |||||||    
T  2327568 acaacat 2327562  T

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