View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19194_high_17 (Length: 250)
Name: NF19194_high_17
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2857048 - 2857284
Alignment:
| Q |
1 |
ccaatggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2857048 |
ccaatggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctacaagtctatgggctaaaacattcaaatttctgctaataaagtt |
2857147 |
T |
|
| Q |
101 |
aacagataccttactaaaagcattcataaaagttttacaatctgcaacaatgtgttcaatactagcaatggagttagtgccctaattcattccactacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2857148 |
aacagataccttactaaaagcattcataaaagctttacaatctgcaacaatgtgttcaatactagcaatggagttagtgccctaatgcattccactacaa |
2857247 |
T |
|
| Q |
201 |
ccaacgcatttgactgcacaataatttctttaattct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
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| T |
2857248 |
ccaacgcatttgactgcacaataatttctttaattct |
2857284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 12276954 - 12277186
Alignment:
| Q |
6 |
ggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagttaacag |
105 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||||||||| ||| | |||||||||||||| |
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| T |
12276954 |
ggaaggggatatcccaaccaagacttgttccctacttgcatagcataacctacaattctatgggctaaaacattcaaatctctaccaataaagttaacag |
12277053 |
T |
|
| Q |
106 |
ataccttactaaaagcattcataaaagttttacaatctgcaacaatgtgttcaatactagcaatggagttagtg-ccctaattcattccactacaaccaa |
204 |
Q |
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| T |
12277054 |
aaaccttactaaaagcattcataatagtttaacaatctgccacaatgtgttcaatactagcaatagaattagagcccctaatgcattccactacagccaa |
12277153 |
T |
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| Q |
205 |
cgcatttgactgcacaataatttctttaattct |
237 |
Q |
| |
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||||| ||||||||||| ||||||||||||||| |
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| T |
12277154 |
cgcatctgactgcacaacaatttctttaattct |
12277186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 6 - 231
Target Start/End: Original strand, 24359118 - 24359344
Alignment:
| Q |
6 |
ggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagttaacag |
105 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | ||||||||||||| |
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| T |
24359118 |
ggaaggggatatcccaaccaagacttgttccctacttgcatatcataacctacaagtctatgcgctaaaacattcaaatctctacctataaagttaacag |
24359217 |
T |
|
| Q |
106 |
ataccttactaaaagcattcataaaagttttacaatctgcaacaatgtgttcaatactagcaatggagttagtg-ccctaattcattccactacaaccaa |
204 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||| |||||||||| || ||||||||| || |||| | ||||||| ||||||||||||||||| |
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| T |
24359218 |
ataccttactaaagacattcataagagttttacaatctgccacaatgtgttaaaaactagcaatagaattagagcccctaatgcattccactacaaccaa |
24359317 |
T |
|
| Q |
205 |
cgcatttgactgcacaataatttcttt |
231 |
Q |
| |
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||||| |||||||||||| |||||||| |
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| T |
24359318 |
cgcatctgactgcacaatgatttcttt |
24359344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 24183156 - 24183017
Alignment:
| Q |
6 |
ggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagttaacag |
105 |
Q |
| |
|
|||||||||||||| |||||||| ||| || ||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |||||||||||||| |
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| T |
24183156 |
ggaaggggatatccaaaccaagatttgttccctacttgcatatcataacctacaagtctatgcgctaaaacattcaaatctctaccaataaagttaacag |
24183057 |
T |
|
| Q |
106 |
ataccttactaaaagcattcataaaagttttacaatctgc |
145 |
Q |
| |
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||||||||||||| |||||||||| ||||||||||||||| |
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| T |
24183056 |
ataccttactaaaggcattcataagagttttacaatctgc |
24183017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 24183019 - 24182966
Alignment:
| Q |
178 |
tgccctaattcattccactacaaccaacgcatttgactgcacaataatttcttt |
231 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||| |||||||||||| |||||||| |
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|
| T |
24183019 |
tgccctaatgcattccactaaaaccaacacatctgactgcacaatgatttcttt |
24182966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 406672 - 406533
Alignment:
| Q |
6 |
ggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagttaacag |
105 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |||||||||||||| |
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| T |
406672 |
ggaaggggatatccaaaccaagacttgttccctacttgcatatcataacctacaagtctatgcgctaaaacattcaaatctctaccaataaagttaacag |
406573 |
T |
|
| Q |
106 |
ataccttactaaaagcattcataaaagttttacaatctgc |
145 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||| |
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| T |
406572 |
ataccttactaaaggcattcataagagctttacaatctgc |
406533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 419406 - 419545
Alignment:
| Q |
6 |
ggaaggggatatcccaaccaagacttgctctctacttgcatagcataacctgcaagtctatgggctaaaacattcaaatttctgctaataaagttaacag |
105 |
Q |
| |
|
|||||||||||||| |||||||||||| || ||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | |||||||||||||| |
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|
| T |
419406 |
ggaaggggatatccaaaccaagacttgttccctacttgcatatcataacctacaagtctatgcgctaaaacattcaaatctctaccaataaagttaacag |
419505 |
T |
|
| Q |
106 |
ataccttactaaaagcattcataaaagttttacaatctgc |
145 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||| |
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|
| T |
419506 |
ataccttactaaaggcattcataagagctttacaatctgc |
419545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 406535 - 406482
Alignment:
| Q |
178 |
tgccctaattcattccactacaaccaacgcatttgactgcacaataatttcttt |
231 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||| |||||||| |
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|
| T |
406535 |
tgccctaatgcattccactacaaccaacacatctgactgcacaatgatttcttt |
406482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 419543 - 419596
Alignment:
| Q |
178 |
tgccctaattcattccactacaaccaacgcatttgactgcacaataatttcttt |
231 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| |||||||||||| |||||||| |
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|
| T |
419543 |
tgccctaatgcattccactacaaccaacacatctgactgcacaatgatttcttt |
419596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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