View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19194_high_3 (Length: 551)
Name: NF19194_high_3
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 532
Target Start/End: Original strand, 30337314 - 30337831
Alignment:
| Q |
17 |
actatgatgccgatgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaact |
116 |
Q |
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| T |
30337314 |
actatgattccgatgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaact |
30337413 |
T |
|
| Q |
117 |
catcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctt |
216 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30337414 |
catcttccgtgaatgcttcaacaaccgtgaaaatcctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctt |
30337513 |
T |
|
| Q |
217 |
tctcccattcaggcgtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttaggaaagaaaaagaat |
316 |
Q |
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| T |
30337514 |
tctcccattcaggggtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttgggaaagaaaaagaat |
30337613 |
T |
|
| Q |
317 |
gatagtttctgatat----aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtgac |
412 |
Q |
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| T |
30337614 |
gatagtttctgatataagcaagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtaac |
30337713 |
T |
|
| Q |
413 |
acctgaaattgcagatatgtactgtaatttcagagatttaattactagtttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatt |
512 |
Q |
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| T |
30337714 |
acctgaaattccagatatgtactgtaatttcagtgatttaattactagtttcctttatgttgtaagcctt--gagccaattaagaagttaatgaaaaatt |
30337811 |
T |
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| Q |
513 |
agaattgttttattattctg |
532 |
Q |
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| T |
30337812 |
tgaattgttttattattctg |
30337831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 30325748 - 30325886
Alignment:
| Q |
88 |
ttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactc |
187 |
Q |
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| T |
30325748 |
ttcacccctttcaactacctccgattactcaccttccgtgaatgcttcaacaacccagaaaaccccattaacctctctctttcccctttccctccatctc |
30325847 |
T |
|
| Q |
188 |
tccaacaactcgttttcatagataacctttctcccattc |
226 |
Q |
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| T |
30325848 |
tagaacatcttattttctttgacaacccttctcccattc |
30325886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 30325962 - 30326004
Alignment:
| Q |
314 |
aatgatagtttctgatataagcacttttggctcaaaggctttt |
356 |
Q |
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| T |
30325962 |
aatgatagtttctcataaaagcacttttggctcaaaggctttt |
30326004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 461 - 513
Target Start/End: Original strand, 30321812 - 30321862
Alignment:
| Q |
461 |
tttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatta |
513 |
Q |
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| T |
30321812 |
tttcctttatattgtaagccttgag--ccaattaagaagttaatgaaaaatta |
30321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 30333492 - 30333556
Alignment:
| Q |
336 |
acttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtt |
403 |
Q |
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| T |
30333492 |
acttttggctcaaaggctttta-ctattaaa--gtctcgtttgtttgaatgccctaaagtcacttgtt |
30333556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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