View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19194_high_7 (Length: 346)
Name: NF19194_high_7
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 6023111 - 6022781
Alignment:
| Q |
1 |
tccttctgcatgccccattttcatctgttgatgctattacatgggtaacacctgaatcccaagttttcagaactgtaaccttcgacactctttcaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6023111 |
tccttctgcatgccccattttcatctgttgatgctattacatgggtaacacctgaatcccaagttttcagaactgtaaccttcgacactctttcaaattc |
6023012 |
T |
|
| Q |
101 |
ggaaaccacttcctacagtacaaaaatcaagaatttaataaataaaataccctttaacaataaaattactaaatagatatcgaggcaattatattacctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6023011 |
ggaaaccacttcctacagtacaaaaatcaagaatttaataaataaaataccctttaacaataaaattactaaatagatatcgaggcaattatattacctt |
6022912 |
T |
|
| Q |
201 |
ctcctgcacggacagagctgaacagcacagcacaattttcttgtgagaaccatgagcaatctgactttggctagtagtgtcatgtttgcggctacagatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6022911 |
ctcctgcacggacagagctgaacagcacagcacaattttcttgtgagaaccatgagcaatctgactttggctagtagtgtcatgtttgcggctacagatt |
6022812 |
T |
|
| Q |
301 |
ttaaccttcttagctgtatgttttttgctat |
331 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
6022811 |
ttaaccttcttcgctgtatgttttttgctat |
6022781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University