View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19194_high_8 (Length: 340)
Name: NF19194_high_8
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 76 - 325
Target Start/End: Original strand, 7055369 - 7055614
Alignment:
| Q |
76 |
aacacactgtcaaattgataatttaagatacaaatagggtgcaaaaataagaattccaagcccaatatataaaacaaattgataataatgaaatcaaggc |
175 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7055369 |
aacacactgtcaaattgacaatttaagaaacaaatagggtgcaaaaataagaattccaagcccaatatataaaacaaattgataataatgaaatcaaggc |
7055468 |
T |
|
| Q |
176 |
aataaaatgagtattatattgatatgattcaaagagtacgtgcatttcatacctatctccaacaggcttagtgaaaatctgaagaatggtaccctgatca |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7055469 |
aataaaatgagtattatattgatatgattcaaaga----gtgcatttcatacctatctccaacaggcttagtgaaaatctgaagaatagtaccctgatca |
7055564 |
T |
|
| Q |
276 |
tctctatcaaccaaaactccaagctcttcacactccttaatctgttcatc |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7055565 |
tctctatcaaccaaaattccaagctcttcacactccttaatctgttcatc |
7055614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29632665 - 29632628
Alignment:
| Q |
19 |
gtatgggtggtacggaggaaaggatgtctaccaaacat |
56 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29632665 |
gtatgggtggtatggaggaaaggatgtctaccaaacat |
29632628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 325
Target Start/End: Original strand, 39641651 - 39641752
Alignment:
| Q |
224 |
atacctatctccaacaggcttagtgaaaatctgaagaatggtaccctgatcatctctatcaaccaaaactccaagctcttcacactccttaatctgttca |
323 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39641651 |
atacctatctccaatgggcttagtaaaaatctgaagcagagtaccctgatcatctctatcaaccaaaatcccaagctcttcacactccttaatctgttca |
39641750 |
T |
|
| Q |
324 |
tc |
325 |
Q |
| |
|
|| |
|
|
| T |
39641751 |
tc |
39641752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 39637015 - 39637123
Alignment:
| Q |
218 |
catttcatacctatctccaacaggcttagtgaaaatctgaagaatggtaccctgatcatctctatcaaccaaaa-ctccaagctcttcacactccttaat |
316 |
Q |
| |
|
|||| |||||||||| |||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||| | | ||||||||||||||||||||| |
|
|
| T |
39637015 |
cattacatacctatcaccaataggcttagtaaaaatctgaagcaaagtaccctgatcatctctatcaaccaaaatcccaaagctcttcacactccttaat |
39637114 |
T |
|
| Q |
317 |
ctgttcatc |
325 |
Q |
| |
|
||||||||| |
|
|
| T |
39637115 |
ctgttcatc |
39637123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 39680599 - 39680497
Alignment:
| Q |
223 |
catacctatctccaacaggcttagtgaaaatctgaagaatggtaccctgatcatctctatcaaccaaaactccaagctcttcacactccttaatctgttc |
322 |
Q |
| |
|
|||||||||| |||| |||||| || ||||||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
39680599 |
catacctatcaccaataggcttggtaaaaatctgaagcagagtaccctgatcatctctatcaaccagaatcccaagctcttcacactccttaatctgttc |
39680500 |
T |
|
| Q |
323 |
atc |
325 |
Q |
| |
|
||| |
|
|
| T |
39680499 |
atc |
39680497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University