View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19194_high_9 (Length: 322)
Name: NF19194_high_9
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_high_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 6023399 - 6023096
Alignment:
| Q |
19 |
ggaccatccttaattccgtggatgtcgacattaacttcataacgctcttcatcaacaggtcttgtttctttcatgcaagctttgatccctgcttagcaaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6023399 |
ggaccatccttaattccgtggatgtcgacattaacttcataacgctcttcatcaacaggtcttgtttctttcatgcaagctttgatccctgcttagcaaa |
6023300 |
T |
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| Q |
119 |
aaccaaccaacaccagaataaaaaacaacgnnnnnnngagaagaatttaattgatatttactatgaccttaaagtagtggctccgtgggaaacaagtatc |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6023299 |
aaccaaccaacaccagaataaaaaacaacgaaaaaaagagaagaatttaattgatatttactatgaccttaaagtagtggctctgtgggaaacaagtatc |
6023200 |
T |
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| Q |
219 |
taaatatagaacaaaataaaagaactgaacttacactcaatgctgagaatccactttccctccagaatacccagcaatactttgagagtccttctgcatg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6023199 |
taaatatagaacaaaataaaagaactgaacttacactcaatgctgagaatccactttccctccagaatacccaacaatactttgagagtccttctgcatg |
6023100 |
T |
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| Q |
319 |
cccc |
322 |
Q |
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|||| |
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| T |
6023099 |
cccc |
6023096 |
T |
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