View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19194_low_1 (Length: 796)
Name: NF19194_low_1
Description: NF19194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19194_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 332 - 782
Target Start/End: Original strand, 8955112 - 8955563
Alignment:
| Q |
332 |
cttgacaaactaattcaactagcttgtaatttaaaacttattagtttacaattaccaagtatgaatagaattttctctatgatttcgcaacaagaaagaa |
431 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8955112 |
cttgacaaactaattcaattagcttgtaatttaaaacttattagtttaaaattaccaagtatgaatagagttttctctatgatttcgcaacaagaaagaa |
8955211 |
T |
|
| Q |
432 |
caacaatatgaactccttcctccagcaatttgttcttcacttcactattttatgtcatgttactccctataggcgtctcattggccgtcttttatatttt |
531 |
Q |
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| T |
8955212 |
caacaatatgaactccttcctccagcaatttgttcttcactttactattttatgtcatgttactacctataggcgtctcattggccgtcttttatatttt |
8955311 |
T |
|
| Q |
532 |
accaccaccagatcaaatattgcgcatttgctacccaacgactcagttaa-tcatggcgcgaccaacaaaagtttactacaaattaagttgcaatgcgta |
630 |
Q |
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| T |
8955312 |
aacaccaccagatcaaatattgcgcatttgctacctagcgactcagttaattcatggcgtgaccaacaaaagtttactacaaattaagttgcaatgcata |
8955411 |
T |
|
| Q |
631 |
tgctattacatcttaaaaattctccaggtcaaggcttatttttcgctcgcaattttgaattgcatgtcttattaggatttgccaatgatgactgggtttg |
730 |
Q |
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| T |
8955412 |
tgctattacatcttaaaaattctccaggtcaaggcttatttttcgctcgcaattttgaattgcatgtcttattaggatttgccaatgatggctgggtttg |
8955511 |
T |
|
| Q |
731 |
ttgcattgacacccataaatcaatctctggttattgtttctttgttggtatt |
782 |
Q |
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| T |
8955512 |
ttgcattgacacccataaatcaatctctggtttttgtttttttgttggtatt |
8955563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 379 - 782
Target Start/End: Complemental strand, 8965150 - 8964745
Alignment:
| Q |
379 |
acaattaccaagtatgaatagaattttctctatgatttcgcaacaagaaaga--acaacaatatgaactccttcctccagcaatttgttcttcacttcac |
476 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8965150 |
acaattaccaagtatgaatagagttttctctatgatttcgcaacaagaaagacaacgacaatatggactccttcctccagcaatttgttcttcacttcac |
8965051 |
T |
|
| Q |
477 |
tattttatgtcatgttactccctataggcgtctcattggccgtcttttatattttaccaccaccagatcaaatattgcgcatttgctacccaacgactca |
576 |
Q |
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|||||||| |||| |||||| ||||||| |||||||||||||||| |||||| | | |||||||||| |||||||||||||||| |||||||||||||| |
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| T |
8965050 |
tattttatctcatcttactcactataggtgtctcattggccgtctcttatatctcaacaccaccagaccaaatattgcgcattttttacccaacgactca |
8964951 |
T |
|
| Q |
577 |
gttaatcatggcgcgaccaacaaaagtttactacaaattaagttgcaatgcgtatgctattacatcttaaaaattctccaggtcaaggcttatttttcgc |
676 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
8964950 |
gttaatcatggtgcgaccaacaaaagtttactacaaattaagttgcaatgcgtatgctattacatcttaaatattctccaagtcaaggcttatttttcgc |
8964851 |
T |
|
| Q |
677 |
tcgcaattttgaattgcatgtcttattaggatttgccaatgatgactgggtttgttgcattgacacccataaatcaatctctggttattgtttctttgtt |
776 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8964850 |
tcgcaattttgaattgcatgtcttattaggatttgccaatgatggctggatttgttgcattgacacccataaatcaatctctggttattgtttctttgtt |
8964751 |
T |
|
| Q |
777 |
ggtatt |
782 |
Q |
| |
|
|||||| |
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|
| T |
8964750 |
ggtatt |
8964745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 332 - 374
Target Start/End: Complemental strand, 8965598 - 8965556
Alignment:
| Q |
332 |
cttgacaaactaattcaactagcttgtaatttaaaacttatta |
374 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8965598 |
cttgacaaactaattcaactagcttgtaatttaaaacttatta |
8965556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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